Detailed Peptide Information
This page shows detailed information of individual peptides present in PlantPepDB database. The page is majorly divided into 3 sections. The first sections contains primary information like peptide activity, source, sequence, etc. In the secondary information section user can access the tertiary structure as well as the physico-chemical properties by clicking the respective links. Further there is also link of the source database and research article from which the peptide data is retrieved. Download the information by clicking
| Primary Information |
|---|
| PPepDB ID | PPepDB_4338 |
| Peptide Name | LPXC_ARATH |
| PMID(s) | --NA-- |
| Plant Source (Scientific Name) | Arabidopsis thaliana |
| Plant Source (Common Name) | Mouse-ear cress |
| Plant Family | Brassicaceae |
| Peptide Family | --NA-- |
| Peptide Function | Signaling-peptide |
| Peptide Function Description | Alternative splicing; Complete proteome; Hydrolase; Lipid A biosynthesis; Lipid synthesis; Signal | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase precursor,(EC 3.5.1.-) (UDP-3-O-acyl-GlcNAc deacetylase). |
| Activity Against | --NA-- |
| IC50 value | --NA-- |
| Sequence | AIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALETRITCELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVEVPIFDGSAKEWVDGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLDNAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRFIPASIEFAQESPLCTTLLKDLPVAHIVAYKAGHALHTDLARHLTMDMRLPVTVKATKPSFLVIWIRYSSAASSPTVSLNPSGRLQQTLAGSVEVKG |
| Sequence Length | 326 |
| Validation | Predicted |
| Average Molecular Weight (Da) | 35716.74 |
| Monoisotopic Molecular Weight (Da) | 35694.16 |
| Isoelectric Point (pI) | 6.15 |
| Method / Extraction | --NA-- |
| External links (Uniprot, PDB and Source Information Database) |
|---|
| Uniprot | P0C2G7 |
| NCBI | --NA-- |
| EMBL | AE005172 |
| Link to Source Databases | SPdb143424 |
|---|
| Addtional Information | FUNCTION:Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. The target for the lipopolysaccharides produced in eukaryotes could either be the cell envelope, endomembranes, or the vacuolar membrane (Potential).CATALYTIC ACTIVITY:UDP-3-O-(3-hydroxytetradecanoyl)-N- acetylglucosamine H(2)O = UDP-3-O-(3-hydroxytetradecanoyl)- glucosamine acetate.PATHWAY:Glycolipid biosynthesis; lipid (IV)A biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-D-glucosamine: step 2/6.ALTERNATIVE PRODUCTS:Event=Alternative splicing; Named isoforms=2; Name=1; IsoId=P0C2G7-1; Sequence=Displayed; Name=2; IsoId=P0C2G7-2; Sequence=VSP_022944, VSP_022945; Note=No experimental confirmation available;SIMILARITY:Belongs to the lpxC family.SEQUENCE CAUTION:Sequence=AAG03124.1; Type=Erroneous gene model prediction; Note=The predicted gene At1g24793 has been split into 2 genes: At1g24793 and At1g24795; Sequence=AAG03126.1; Type=Erroneous gene model prediction; Note=The predicted gene At1g24880 has been split into 2 genes: At1g24880 and At1g24885; Sequence=AAG03128.1; Type=Erroneous gene model prediction; Note=The predicted gene At1g25054 has been split into 2 genes: At1g25054 and At1g25056; Sequence=AAG03130.1; Type=Erroneous gene model prediction; Note=The predicted gene At1g25141 has been split into 2 genes: At1g25141 and At1g25143; Sequence=AAG28816.2; Type=Erroneous gene model prediction; Note=The predicted gene At1g25210 has been split into 2 genes: At1g25210 and At1g25215; Sequence=AAG40091.1; Type=Erroneous gene model prediction; Note=The predicted gene At1g25141 has been split into 2 genes: At1g25141 and At1g25143; |
