Alignment Based on Smith-Waterman Algorithm


This page is designed to facilitate the user to align their query sequence to the peptide sequences available in PlantPepDB. User can align only peptide sequences. Only the top 10 alignment results will be displayed. Complete results file can be downloaded from 'DOWNLOAD' link provided at result page. For more information, please visit HELP page.


  Type/paste query sequences in FASTA format:
       
   

   or Upload your sequence
  
Gap opening penalty                    Gap extension penalty