Alignment based on Smith-Waterman Algorithm

This page is designed to facilitate the user to align their query sequence to the fusion transcript sequences available in AtFusionDB. User can align only nucleotide sequences. Only the top 10 alignment results will be displayed. For more information see HELP page.

Type/paste query sequences in FASTA format:
    

or Upload your sequence  

Gap opening penalty                    Gap extension penalty   
                 

Dr. Shailesh Kumar                 SK Lab                 NIPGR                  DBT                  © 2018 Shailesh Lab.