This page shows the results of the PtRNAdb Search Module. Users can further filter the results by entering keywords in the search bar on the top right corner of the output table. For further information about each entry user can click on the PtRNAdb ID. To download the results click:
| PtRNAdb ID | Plant Name | tRNA Name | tRNA Locus | tRNA Type | Anticodon | tRNA length | Infernal Score | Secondary structure score | HMM Score | Isotype Score | Algae / Bryophyte | Monocot / Dicot |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3554_PtRNAdb | Aegilops_tauschii | chr-7.trna43-Ser-CGA | chr-7 : 81134719 - 81134895 | Ser | CGA | 177 | 26.4 | 10.60 | 15.80 | 15.8 | -NA- | Monocot |
| 6910_PtRNAdb | Arachis_hypogaea | chr-A06.trna29-Asp-GTC | chr-A06 : 61733728 - 61733826 | Asp | GTC | 99 | 32.7 | 11.50 | 21.20 | 22.1 | -NA- | Dicot |
| 12824_PtRNAdb | Bathycoccus_prasinos | chr-5.trna2-Leu-AAG | chr-5 : 765846 - 765992 | Leu | AAG | 147 | 31.4 | 15.50 | 15.90 | 30.8 | Algae | -NA- |
| 17697_PtRNAdb | Brassica_napus | chr-C2.trna27-Phe-GAA | chr-C2 : 13771839 - 13771952 | Phe | GAA | 114 | 41.4 | 13.70 | 27.70 | 41.2 | -NA- | Dicot |
| 25891_PtRNAdb | Capsicum_baccatum | chr-10.trna83-Ser-TGA | chr-10 : 192638182 - 192638082 | Ser | TGA | 101 | 39.3 | 15.80 | 23.50 | 43.5 | -NA- | Dicot |
| 26379_PtRNAdb | Capsicum_baccatum | chr-3.trna21-iMet-CAT | chr-3 : 71442177 - 71442279 | iMet | CAT | 103 | 31.3 | 19.90 | 11.40 | 31.0 | -NA- | Dicot |
| 27346_PtRNAdb | Capsicum_chinense | chr-2.trna6-Glu-TTC | chr-2 : 30241488 - 30241592 | Glu | TTC | 97 | 35.5 | 7.70 | 27.80 | 56.5 | -NA- | Dicot |
| 27423_PtRNAdb | Capsicum_chinense | chr-3.trna41-iMet-CAT | chr-3 : 181222434 - 181222536 | iMet | CAT | 103 | 23.6 | 13.50 | 10.10 | 40.7 | -NA- | Dicot |
| 27478_PtRNAdb | Capsicum_chinense | chr-4.trna24-Tyr-GTA | chr-4 : 147071060 - 147071156 | Tyr | GTA | 97 | 22.0 | 9.70 | 12.30 | 18.1 | -NA- | Dicot |
| 28356_PtRNAdb | Cenchrus_americanus | chr-4.trna81-Lys-CTT | chr-4 : 112432705 - 112432606 | Lys | CTT | 100 | 23.4 | 11.20 | 12.20 | 33.1 | -NA- | Monocot |
| 34046_PtRNAdb | Cucurbita_pepo | chr-LG04.trna163-Ser-CGA | chr-LG04 : 6065440 - 6065343 | Ser | CGA | 98 | 52.4 | 24.30 | 28.10 | 100.7 | -NA- | Dicot |
| 34622_PtRNAdb | Cucurbita_pepo | chr-LG06.trna42-Ser-TGA | chr-LG06 : 7107403 - 7107506 | Ser | TGA | 104 | 42.9 | 8.30 | 34.60 | 40.9 | -NA- | Dicot |
| 35912_PtRNAdb | Cucurbita_pepo | chr-LG13.trna71-Ser-TGA | chr-LG13 : 4396890 - 4396992 | Ser | TGA | 103 | 32.2 | 10.00 | 22.20 | 33.8 | -NA- | Dicot |
| 36096_PtRNAdb | Cucurbita_pepo | chr-LG14.trna70-Ser-TGA | chr-LG14 : 6234026 - 6234134 | Ser | TGA | 109 | 24.2 | 5.90 | 18.30 | 58.7 | -NA- | Dicot |
| 36152_PtRNAdb | Cucurbita_pepo | chr-LG15.trna134-Ile-AAT | chr-LG15 : 5980207 - 5980097 | Ile | AAT | 111 | 45.1 | 16.30 | 28.80 | 51.7 | -NA- | Dicot |
| 37107_PtRNAdb | Cynara_cardunculus | chr-16.trna13-Tyr-GTA | chr-16 : 18044059 - 18043962 | Tyr | GTA | 98 | 30.5 | 9.40 | 21.10 | 33.8 | -NA- | Dicot |
| 37706_PtRNAdb | Daucus_carota | chr-3.trna32-Ser-CGA | chr-3 : 45396397 - 45396297 | Ser | CGA | 101 | 33.0 | 6.80 | 26.20 | 30.8 | -NA- | Dicot |
| 37949_PtRNAdb | Daucus_carota | chr-7.trna8-Ser-TGA | chr-7 : 3851775 - 3851875 | Ser | TGA | 101 | 26.4 | 14.30 | 12.10 | 25.3 | -NA- | Dicot |
| 37954_PtRNAdb | Daucus_carota | chr-8.trna17-Lys-CTT | chr-8 : 29140119 - 29140225 | Lys | CTT | 103 | 40.7 | 21.40 | 19.30 | 43.0 | -NA- | Dicot |
| 37955_PtRNAdb | Daucus_carota | chr-8.trna18-Lys-CTT | chr-8 : 29140502 - 29140608 | Lys | CTT | 103 | 40.6 | 20.60 | 20.00 | 51.0 | -NA- | Dicot |
| 37956_PtRNAdb | Daucus_carota | chr-8.trna19-Lys-CTT | chr-8 : 29141007 - 29141113 | Lys | CTT | 103 | 40.6 | 20.60 | 20.00 | 51.0 | -NA- | Dicot |
| 37958_PtRNAdb | Daucus_carota | chr-8.trna20-Lys-CTT | chr-8 : 29141390 - 29141496 | Lys | CTT | 103 | 40.6 | 20.60 | 20.00 | 51.0 | -NA- | Dicot |
| 49708_PtRNAdb | Ipomoea_trifida | chr-04.trna213-Ile-AAT | chr-04 : 3248874 - 3248774 | Ile | AAT | 101 | 46.7 | 8.10 | 38.60 | 54.9 | -NA- | Dicot |
| 52596_PtRNAdb | Ipomoea_triloba | chr-16.trna30-Phe-GAA | chr-16 : 10596862 - 10596959 | Phe | GAA | 98 | 26.0 | 12.10 | 13.90 | 39.8 | -NA- | Dicot |
| 54082_PtRNAdb | Ipomoea_triloba | chr-9.trna130-Val-TAC | chr-9 : 14388226 - 14388121 | Val | TAC | 106 | 25.2 | 6.30 | 18.90 | 29.4 | -NA- | Dicot |
| 57700_PtRNAdb | Malus_domestica | chr-10.trna29-Leu-CAA | chr-10 : 37172104 - 37171996 | Leu | CAA | 109 | 29.6 | 6.80 | 22.80 | 31.3 | -NA- | Dicot |
| 59918_PtRNAdb | Medicago_truncatula | chr-7.trna98-Ser-GGA | chr-7 : 33756317 - 33756220 | Ser | GGA | 98 | 39.6 | 15.60 | 24.00 | 41.8 | -NA- | Dicot |
| 64943_PtRNAdb | Oryza_brachyantha | chr-8.trna16-Lys-CTT | chr-8 : 11664711 - 11664806 | Lys | CTT | 96 | 40.7 | 14.40 | 26.30 | 36.6 | -NA- | Monocot |
| 66626_PtRNAdb | Oryza_punctata | chr-12.trna34-Cys-GCA | chr-12 : 27376231 - 27376408 | Cys | GCA | 100 | 20.2 | 6.10 | 14.10 | 11.4 | -NA- | Monocot |
| 70607_PtRNAdb | Papaver_somniferum | chr-3.trna354-Ser-TGA | chr-3 : 78888983 - 78888883 | Ser | TGA | 101 | 23.7 | 9.60 | 14.10 | 39.1 | -NA- | Dicot |
| 74134_PtRNAdb | Populus_trichocarpa | chr-14.trna11-His-GTG | chr-14 : 9348921 - 9349026 | His | GTG | 106 | 40.0 | 26.00 | 14.00 | 48.2 | -NA- | Dicot |
| 77522_PtRNAdb | Rosa_chinensis | chr-7.trna26-Ser-AGA | chr-7 : 21256419 - 21256519 | Ser | AGA | 101 | 27.5 | 8.00 | 19.50 | 33.0 | -NA- | Dicot |
| 79304_PtRNAdb | Saccharum_spontaneum | chr-6D.trna76-Asn-GTT | chr-6D : 6987994 - 6987893 | Asn | GTT | 102 | 20.0 | 8.40 | 11.60 | 28.1 | -NA- | Monocot |
| 81206_PtRNAdb | Setaria_italica | chr-VIII.trna48-Tyr-GTA | chr-VIII : 42346367 - 42346248 | Tyr | GTA | 98 | 61.1 | 25.20 | 35.90 | 97.9 | -NA- | Monocot |
| 82084_PtRNAdb | Solanum_lycopersicum | chr-11.trna33-Ser-TGA | chr-11 : 51089029 - 51088933 | Ser | TGA | 97 | 37.4 | 13.80 | 23.60 | 46.4 | -NA- | Dicot |
| 95422_PtRNAdb | Triticum_aestivum | chr-7D.trna54-Ser-CGA | chr-7D : 88623339 - 88623515 | Ser | CGA | 177 | 26.3 | 12.70 | 13.60 | 15.7 | -NA- | Monocot |
| 103145_PtRNAdb | Triticum_urartu | chr-3.trna563-Ile-AAT | chr-3 : 739095591 - 739095692 | Ile | AAT | 102 | 55.7 | 21.60 | 34.10 | 65.0 | -NA- | Monocot |
| 108040_PtRNAdb | Zea_mays | chr-1.trna219-Lys-CTT | chr-1 : 143684639 - 143684544 | Lys | CTT | 96 | 23.6 | 11.00 | 12.60 | 27.2 | -NA- | Monocot |
| 113223_PtRNAdb | Cucurbita_pepo | Mt.trna6-Ser-TGA | Mt : 300640 - 300743 | Ser | TGA | 104 | 48.6 | 4.50 | 44.10 | n/a | -NA- | Dicot |
© Developed by Dr. Shailesh Laboratory | National Institute of Plant Genome Research (NIPGR), New Delhi, India | DBT
