Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID3554_PtRNAdb
Plant SourceAegilops tauschii     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-7.trna43
tRNA locuschr-7 : 81134719 - 81134895 (+)
IsoacceptorSer

[NOTE: User can view the results of the consensus based study of all the tRNAs of Ser isoacceptor in Aegilops_tauschii plant by clicking on the isoacceptor]

IsodecoderCGA

[NOTE: User can view the results of the consensus based study of all the tRNAs of CGA isodecoder in Aegilops_tauschii plant by clicking on the isodecoder]

tRNA Sequence
B-Box
GGGGATATAGCTCTGTTGGTAGAGCTCTGAGAGAACACTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGAAGTTATAGTCTATCGTTGGCCTCTATGGTAGAACCTGTCGGGGAGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGGCAGCGGTTCGAGTCCACTTATCTCCA
tRNA secondary structure
>>>>>>>..>>>>........<<<<...............................................................................................................................>>.>>.......<<.<<<<<<<<<.
Upstream sequence (upto 100nt)
CGGGCGAGGTCTCTTGTTCAAGTCCAGGATGGCCCAGCTGCGCCAGGGAAAAGAATAGAAGAAGCATTTGACTCTTTCATGCATAATCCACTTGGCTTGG
Downstream sequence (upto 100nt)
GCCCATGATCTTAGGGGATACTATGATAGCGATAGCACCGAATTTTGCCAATTCGGCAGTTCGATCTATGATTTCACATTCATGGACGCTGATAAGATCC
Mature tRNA
GGGGAUAUAGCUCUGUUGGUAGAGCUCUGAGAGAACACUACGAUGAAAGUUGUAAGCUGUGUUCGGGGGGAAGUUAUAGUCUAUCGUUGGCCUCUAUGGUAGAACCUGUCGGGGAGGCCUGAGAGGCGGUGGUUUACCCUGUGGCGGAUGGCAGCGGUUCGAGUCCACUUAUCUCCA
HMM Score15.80
Secondary structure Score10.60