Detailed information



This page of PtRNAdb provides more detailed information about individual tRNA present in the database. Further, by clicking on the isoacceptor or isodecoder name, user can view the consensus based study results of all the tRNAs from the respective plant and isoacceptor/isodecoder.


PtRNAdb ID64943_PtRNAdb
Plant SourceOryza brachyantha     |     Phanerogamae -->Monocot
Genome levelNuclear
tRNA IDchr-8.trna16
tRNA locuschr-8 : 11664711 - 11664806 (+)
IsoacceptorLys

[NOTE: User can view the results of the consensus based study of all the tRNAs of Lys isoacceptor in Oryza_brachyantha plant by clicking on the isoacceptor]

IsodecoderCTT

[NOTE: User can view the results of the consensus based study of all the tRNAs of CTT isodecoder in Oryza_brachyantha plant by clicking on the isodecoder]

tRNA Sequence
GCCCGTCTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGCCGTGGATAGAGATGACAACGGAGACCCGCGACCCGAGATCCGATGGGTA
tRNA secondary structure
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>....................<<<<<...........<<<<<<<.
Upstream sequence (upto 100nt)
GTTATCTCTTATTAGATTTTGTAAATGTATTATAATTTCGAGTGGAGGCATTTTAAAAGTTTGGTAAAATATTATACAAAACAAAAAAAATTCCATGTTA
Downstream sequence (upto 100nt)
TTTACTTTATTAGGGTATGGGTATGAGCTACATATATTACCCGTGGGTAACTAATTCGGAAAATACTTTCACCCGATAGGTACGCAGGTATGAAAACGTT
Mature tRNA
GCCCGUCUAGCUCAGUCGGCAGAGCGCAAGGCUCUUAACCUUGUGGCCGUGGAUAGAGAUGACAACGGAGACCCGCGACCCGAGAUCCGAUGGGUA
HMM Score26.30
Secondary structure Score14.40