BLAST Search

The BLAST module of PtRNAdb will enable user to search homology with the PtRNAdb database as well as other tRNA databases like PlantRNA and NCBI reported Plant tRNAs. The default database for BLAST is PtRNAdb.

Type/paste query sequences in FASTA format:      or Upload your sequence

Choose either option and futher select PtRNAdb database: Genome Level :    All PtRNAdb tRNAs (Default) Nuclear tRNAs Mitochondrial tRNAs Plastidial tRNAs Individual Plant :    Actinidia_chinensis (all)Actinidia_chinensis (nuclear)Actinidia_chinensis (plastidial)Actinidia_eriantha (all)Actinidia_eriantha (nuclear)Actinidia_eriantha (plastidial)Aegilops_tauschii (all)Aegilops_tauschii (nuclear)Aegilops_tauschii (plastidial)Alloteropsis_semialata (all)Alloteropsis_semialata (nuclear)Alloteropsis_semialata (plastidial)Andrographis_paniculata (all)Andrographis_paniculata (nuclear)Andrographis_paniculata (plastidial)Arabidopsis_thaliana (all)Arabidopsis_thaliana (mitochondrial)Arabidopsis_thaliana (nuclear)Arabidopsis_thaliana (plastidial)Arabis_alpina (all)Arabis_alpina (nuclear)Arachis_duranensis (all)Arachis_duranensis (nuclear)Arachis_hypogaea (all)Arachis_hypogaea (nuclear)Arachis_hypogaea (plastidial)Arachis_ipaensis (all)Arachis_ipaensis (nuclear)Arachis_monticola (all)Arachis_monticola (nuclear)Asparagus_officinalis (all)Asparagus_officinalis (nuclear)Asparagus_officinalis (plastidial)Bathycoccus_prasinos (all)Bathycoccus_prasinos (mitochondrial)Bathycoccus_prasinos (nuclear)Bathycoccus_prasinos (plastidial)Beta_vulgaris (all)Beta_vulgaris (mitochondrial)Beta_vulgaris (nuclear)Brachypodium_distachyon (all)Brachypodium_distachyon (nuclear)Brachypodium_distachyon (plastidial)Brassica_juncea (all)Brassica_juncea (nuclear)Brassica_napus (all)Brassica_napus (mitochondrial)Brassica_napus (nuclear)Brassica_napus (plastidial)Brassica_nigra (all)Brassica_nigra (mitochondrial)Brassica_nigra (nuclear)Brassica_nigra (plastidial)Brassica_oleracea (all)Brassica_oleracea (mitochondrial)Brassica_oleracea (nuclear)Brassica_oleracea (plastidial)Brassica_rapa (all)Brassica_rapa (mitochondrial)Brassica_rapa (nuclear)Brassica_rapa (plastidial)Cajanus_cajan (all)Cajanus_cajan (nuclear)Cajanus_cajan (plastidial)Camelina_sativa (all)Camelina_sativa (nuclear)Camelina_sativa (plastidial)Cannabis_sativa (all)Cannabis_sativa (mitochondrial)Cannabis_sativa (nuclear)Cannabis_sativa (plastidial)Capsicum_annuum (all)Capsicum_annuum (mitochondrial)Capsicum_annuum (nuclear)Capsicum_annuum (plastidial)Capsicum_baccatum (all)Capsicum_baccatum (nuclear)Capsicum_baccatum (plastidial)Capsicum_chinense (all)Capsicum_chinense (nuclear)Capsicum_chinense (plastidial)Cenchrus_americanus (all)Cenchrus_americanus (nuclear)Cenchrus_americanus (plastidial)Cicer_arietinum (all)Cicer_arietinum (nuclear)Cicer_arietinum (plastidial)Citrullus_lanatus (all)Citrullus_lanatus (mitochondrial)Citrullus_lanatus (nuclear)Citrullus_lanatus (plastidial)Citrus_maxima (all)Citrus_maxima (nuclear)Citrus_maxima (plastidial)Citrus_sinensis (all)Citrus_sinensis (mitochondrial)Citrus_sinensis (nuclear)Citrus_sinensis (plastidial)Coffea_arabica (all)Coffea_arabica (nuclear)Coffea_arabica (plastidial)Coffea_canephora (all)Coffea_canephora (nuclear)Coffea_canephora (plastidial)Coffea_eugenioides (all)Coffea_eugenioides (nuclear)Cucumis_sativus (all)Cucumis_sativus (mitochondrial)Cucumis_sativus (nuclear)Cucumis_sativus (plastidial)Cucurbita_pepo (all)Cucurbita_pepo (mitochondrial)Cucurbita_pepo (nuclear)Cucurbita_pepo (plastidial)Cynara_cardunculus (all)Cynara_cardunculus (nuclear)Daucus_carota (all)Daucus_carota (mitochondrial)Daucus_carota (nuclear)Daucus_carota (plastidial)Dioscorea_rotundata (all)Dioscorea_rotundata (nuclear)Dioscorea_rotundata (plastidial)Elaeis_guineensis (all)Elaeis_guineensis (nuclear)Elaeis_guineensis (plastidial)Eutrema_salsugineum (all)Eutrema_salsugineum (nuclear)Eutrema_salsugineum (plastidial)Fagopyrum_tataricum (all)Fagopyrum_tataricum (nuclear)Fagopyrum_tataricum (plastidial)Glycine_max (all)Glycine_max (mitochondrial)Glycine_max (nuclear)Glycine_max (plastidial)Glycine_soja (all)Glycine_soja (mitochondrial)Glycine_soja (nuclear)Glycine_soja (plastidial)Gossypioides_kirkii (all)Gossypioides_kirkii (nuclear)Gossypium_arboreum (all)Gossypium_arboreum (mitochondrial)Gossypium_arboreum (nuclear)Gossypium_arboreum (plastidial)Gossypium_hirsutum (all)Gossypium_hirsutum (mitochondrial)Gossypium_hirsutum (nuclear)Gossypium_hirsutum (plastidial)Gossypium_raimondii (all)Gossypium_raimondii (mitochondrial)Gossypium_raimondii (nuclear)Gossypium_raimondii (plastidial)Ipomoea_batatas (all)Ipomoea_batatas (nuclear)Ipomoea_batatas (plastidial)Ipomoea_trifida (all)Ipomoea_trifida (nuclear)Ipomoea_trifida (plastidial)Ipomoea_triloba (all)Ipomoea_triloba (nuclear)Ipomoea_triloba (plastidial)Lagenaria_siceraria (all)Lagenaria_siceraria (nuclear)Lagenaria_siceraria (plastidial)Leersia_perrieri (all)Leersia_perrieri (nuclear)Linum_usitatissimum (all)Linum_usitatissimum (nuclear)Linum_usitatissimum (plastidial)Lupinus_angustifolius (all)Lupinus_angustifolius (nuclear)Malus_domestica (all)Malus_domestica (mitochondrial)Malus_domestica (nuclear)Manihot_esculenta (all)Manihot_esculenta (nuclear)Manihot_esculenta (plastidial)Medicago_truncatula (all)Medicago_truncatula (mitochondrial)Medicago_truncatula (nuclear)Medicago_truncatula (plastidial)Miscanthus_sacchariflorus (all)Miscanthus_sacchariflorus (nuclear)Miscanthus_sacchariflorus (plastidial)Morella_rubra (all)Morella_rubra (nuclear)Morella_rubra (plastidial)Musa_acuminata (all)Musa_acuminata (nuclear)Musa_balbisiana (all)Musa_balbisiana (nuclear)Musa_balbisiana (plastidial)Nelumbo_nucifera (all)Nelumbo_nucifera (mitochondrial)Nelumbo_nucifera (nuclear)Nelumbo_nucifera (plastidial)Nicotiana_attenuata (all)Nicotiana_attenuata (mitochondrial)Nicotiana_attenuata (nuclear)Nicotiana_attenuata (plastidial)Olea_europaea (all)Olea_europaea (nuclear)Olea_europaea (plastidial)Oryza_barthii (all)Oryza_barthii (nuclear)Oryza_barthii (plastidial)Oryza_brachyantha (all)Oryza_brachyantha (nuclear)Oryza_brachyantha (plastidial)Oryza_glumipatula (all)Oryza_glumipatula (nuclear)Oryza_glumipatula (plastidial)Oryza_longistaminata (all)Oryza_longistaminata (nuclear)Oryza_longistaminata (plastidial)Oryza_meridionalis (all)Oryza_meridionalis (nuclear)Oryza_meridionalis (plastidial)Oryza_punctata (all)Oryza_punctata (nuclear)Oryza_punctata (plastidial)Oryza_sativa (all)Oryza_sativa (mitochondrial)Oryza_sativa (nuclear)Oryza_sativa (plastidial)Ostreococcus_tauri (all)Ostreococcus_tauri (mitochondrial)Ostreococcus_tauri (nuclear)Ostreococcus_tauri (plastidial)Panicum_hallii (all)Panicum_hallii (nuclear)Panicum_miliaceum (all)Panicum_miliaceum (nuclear)Panicum_miliaceum (plastidial)Papaver_somniferum (all)Papaver_somniferum (nuclear)Papaver_somniferum (plastidial)Phaseolus_vulgaris (all)Phaseolus_vulgaris (nuclear)Phaseolus_vulgaris (plastidial)Physcomitrella_patens (all)Physcomitrella_patens (mitochondrial)Physcomitrella_patens (nuclear)Physcomitrella_patens (plastidial)Populus_trichocarpa (all)Populus_trichocarpa (nuclear)Populus_trichocarpa (plastidial)Prunus_persica (all)Prunus_persica (nuclear)Prunus_persica (plastidial)Quercus_lobata (all)Quercus_lobata (nuclear)Quercus_lobata (plastidial)Raphanus_sativus (all)Raphanus_sativus (mitochondrial)Raphanus_sativus (nuclear)Raphanus_sativus (plastidial)Rosa_chinensis (all)Rosa_chinensis (mitochondrial)Rosa_chinensis (nuclear)Rosa_chinensis (plastidial)Saccharum_spontaneum (all)Saccharum_spontaneum (nuclear)Saccharum_spontaneum (plastidial)Schrenkiella_parvula (all)Schrenkiella_parvula (nuclear)Schrenkiella_parvula (plastidial)Scutellaria_baicalensis (all)Scutellaria_baicalensis (nuclear)Scutellaria_baicalensis (plastidial)Setaria_italica (all)Setaria_italica (nuclear)Setaria_italica (plastidial)Setaria_viridis (all)Setaria_viridis (nuclear)Setaria_viridis (plastidial)Solanum_lycopersicum (all)Solanum_lycopersicum (mitochondrial)Solanum_lycopersicum (nuclear)Solanum_lycopersicum (plastidial)Solanum_pennellii (all)Solanum_pennellii (mitochondrial)Solanum_pennellii (nuclear)Solanum_pennellii (plastidial)Sorghum_bicolor (all)Sorghum_bicolor (mitochondrial)Sorghum_bicolor (nuclear)Sorghum_bicolor (plastidial)Spatholobus_suberectus (all)Spatholobus_suberectus (nuclear)Spirodela_polyrhiza (all)Spirodela_polyrhiza (mitochondrial)Spirodela_polyrhiza (nuclear)Spirodela_polyrhiza (plastidial)Theobroma_cacao (all)Theobroma_cacao (nuclear)Theobroma_cacao (plastidial)Trifolium_pratense (all)Trifolium_pratense (nuclear)Triticum_aestivum (all)Triticum_aestivum (mitochondrial)Triticum_aestivum (nuclear)Triticum_aestivum (plastidial)Triticum_dicoccoides (all)Triticum_dicoccoides (nuclear)Triticum_urartu (all)Triticum_urartu (nuclear)Triticum_urartu (plastidial)Utricularia_gibba (all)Utricularia_gibba (nuclear)Utricularia_gibba (plastidial)Vigna_angularis (all)Vigna_angularis (mitochondrial)Vigna_angularis (nuclear)Vigna_angularis (plastidial)Vigna_radiata (all)Vigna_radiata (mitochondrial)Vigna_radiata (nuclear)Vigna_radiata (plastidial)Vigna_unguiculata (all)Vigna_unguiculata (nuclear)Vigna_unguiculata (plastidial)Vitis_riparia (all)Vitis_riparia (nuclear)Vitis_riparia (plastidial)Vitis_vinifera (all)Vitis_vinifera (mitochondrial)Vitis_vinifera (nuclear)Vitis_vinifera (plastidial)Zea_mays (all)Zea_mays (mitochondrial)Zea_mays (nuclear)Zea_mays (plastidial)Ziziphus_jujuba (all)Ziziphus_jujuba (mitochondrial)Ziziphus_jujuba (nuclear)Ziziphus_jujuba (plastidial)

BLAST sequence with other tRNA databases:    PlantRNA Plant tRNAs reported in NCBI

Expect Value: