Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5989 |
| Number of amino acids: | 441 |
| Molecular Weight: | 49985.65 Da |
| Theoretical pI: | 5.91 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 17 | 3.85% |
| Cysteine CYS (C) | 9 | 2.04% |
| Glutamic Acid GLU (E) | 28 | 6.35% |
| Aspartic Acid ASP (D) | 16 | 3.63% |
| Glycine GLY (G) | 32 | 7.26% |
| Phynylalanine PHE (F) | 19 | 4.31% |
| Isoleucine ILE (I) | 28 | 6.35% |
| Histidine HIS (H) | 9 | 2.04% |
| Lysine LYS (K) | 24 | 5.44% |
| Methionine MET (M) | 7 | 1.59% |
| Leucine LEU (L) | 41 | 9.3% |
| Asparagine ASN (N) | 25 | 5.67% |
| Glutamine GLN (Q) | 18 | 4.08% |
| Proline PRO (P) | 24 | 5.44% |
| Serine SER (S) | 40 | 9.07% |
| Arginine ARG (R) | 14 | 3.17% |
| Threonine THR (T) | 29 | 6.58% |
| Tryptophan TRP (W) | 9 | 2.04% |
| Valine VAL (V) | 24 | 5.44% |
| Tyrosine TYR (Y) | 28 | 6.35% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2265 |
| Hydrogen | H | 3439 |
| Nitrogen | N | 577 |
| Oxygen | O | 670 |
| Sulphur | S | 16 |
| Formula | C2265H3439N577O670S16 |
| Total Number of Atoms: | 6967 |
| Total number of positively charged residues (ARG + LYS): | 38 |
| Total number of negatively charged residues (ASP + GLU): | 44 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 91720 Absorption 0.1% (=1 g/l) 1.835, assuming all pairs of CYS residues form cystines Ext. coefficient 91220 Absorption 0.1% (=1 g/l) 1.825, assuming all CYS residues are reduced |
| Aromaticity: | 0.127 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.44 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [33.79, 27.44, 21.09] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 80.6576 |
| Grand average of hydropathicity (GRAVY): | -0.31 |