Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5925 |
| Number of amino acids: | 247 |
| Molecular Weight: | 26506.1 Da |
| Theoretical pI: | 5.52 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 19 | 7.69% |
| Cysteine CYS (C) | 2 | 0.81% |
| Glutamic Acid GLU (E) | 6 | 2.43% |
| Aspartic Acid ASP (D) | 9 | 3.64% |
| Glycine GLY (G) | 14 | 5.67% |
| Phynylalanine PHE (F) | 13 | 5.26% |
| Isoleucine ILE (I) | 14 | 5.67% |
| Histidine HIS (H) | 3 | 1.21% |
| Lysine LYS (K) | 8 | 3.24% |
| Methionine MET (M) | 3 | 1.21% |
| Leucine LEU (L) | 27 | 10.93% |
| Asparagine ASN (N) | 12 | 4.86% |
| Glutamine GLN (Q) | 19 | 7.69% |
| Proline PRO (P) | 15 | 6.07% |
| Serine SER (S) | 28 | 11.34% |
| Arginine ARG (R) | 4 | 1.62% |
| Threonine THR (T) | 24 | 9.72% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 19 | 7.69% |
| Tyrosine TYR (Y) | 8 | 3.24% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1190 |
| Hydrogen | H | 1876 |
| Nitrogen | N | 304 |
| Oxygen | O | 369 |
| Sulphur | S | 5 |
| Formula | C1190H1876N304O369S5 |
| Total Number of Atoms: | 3744 |
| Total number of positively charged residues (ARG + LYS): | 12 |
| Total number of negatively charged residues (ASP + GLU): | 15 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 12045 Absorption 0.1% (=1 g/l) 0.454, assuming all pairs of CYS residues form cystines Ext. coefficient 11920 Absorption 0.1% (=1 g/l) 0.450, assuming all CYS residues are reduced |
| Aromaticity: | 0.085 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 39.39 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.79, 27.94, 22.27] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 94.737 |
| Grand average of hydropathicity (GRAVY): | 0.11 |