Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5871 |
| Number of amino acids: | 424 |
| Molecular Weight: | 48309.02 Da |
| Theoretical pI: | 4.47 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 35 | 8.25% |
| Cysteine CYS (C) | 3 | 0.71% |
| Glutamic Acid GLU (E) | 45 | 10.61% |
| Aspartic Acid ASP (D) | 58 | 13.68% |
| Glycine GLY (G) | 25 | 5.9% |
| Phynylalanine PHE (F) | 15 | 3.54% |
| Isoleucine ILE (I) | 24 | 5.66% |
| Histidine HIS (H) | 9 | 2.12% |
| Lysine LYS (K) | 52 | 12.26% |
| Methionine MET (M) | 4 | 0.94% |
| Leucine LEU (L) | 20 | 4.72% |
| Asparagine ASN (N) | 12 | 2.83% |
| Glutamine GLN (Q) | 11 | 2.59% |
| Proline PRO (P) | 26 | 6.13% |
| Serine SER (S) | 20 | 4.72% |
| Arginine ARG (R) | 4 | 0.94% |
| Threonine THR (T) | 17 | 4.01% |
| Tryptophan TRP (W) | 13 | 3.07% |
| Valine VAL (V) | 14 | 3.3% |
| Tyrosine TYR (Y) | 17 | 4.01% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2157 |
| Hydrogen | H | 3232 |
| Nitrogen | N | 542 |
| Oxygen | O | 708 |
| Sulphur | S | 7 |
| Formula | C2157H3232N542O708S7 |
| Total Number of Atoms: | 6646 |
| Total number of positively charged residues (ARG + LYS): | 56 |
| Total number of negatively charged residues (ASP + GLU): | 103 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 96955 Absorption 0.1% (=1 g/l) 2.007, assuming all pairs of CYS residues form cystines Ext. coefficient 96830 Absorption 0.1% (=1 g/l) 2.004, assuming all CYS residues are reduced |
| Aromaticity: | 0.106 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 31.75 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [24.29, 19.58, 24.53] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 58.3019 |
| Grand average of hydropathicity (GRAVY): | -1.04 |