Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5808 |
| Number of amino acids: | 392 |
| Molecular Weight: | 43681.96 Da |
| Theoretical pI: | 5.08 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 24 | 6.12% |
| Cysteine CYS (C) | 12 | 3.06% |
| Glutamic Acid GLU (E) | 17 | 4.34% |
| Aspartic Acid ASP (D) | 30 | 7.65% |
| Glycine GLY (G) | 30 | 7.65% |
| Phynylalanine PHE (F) | 19 | 4.85% |
| Isoleucine ILE (I) | 28 | 7.14% |
| Histidine HIS (H) | 7 | 1.79% |
| Lysine LYS (K) | 16 | 4.08% |
| Methionine MET (M) | 9 | 2.3% |
| Leucine LEU (L) | 24 | 6.12% |
| Asparagine ASN (N) | 28 | 7.14% |
| Glutamine GLN (Q) | 10 | 2.55% |
| Proline PRO (P) | 16 | 4.08% |
| Serine SER (S) | 35 | 8.93% |
| Arginine ARG (R) | 19 | 4.85% |
| Threonine THR (T) | 23 | 5.87% |
| Tryptophan TRP (W) | 8 | 2.04% |
| Valine VAL (V) | 22 | 5.61% |
| Tyrosine TYR (Y) | 15 | 3.83% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1925 |
| Hydrogen | H | 2943 |
| Nitrogen | N | 525 |
| Oxygen | O | 598 |
| Sulphur | S | 21 |
| Formula | C1925H2943N525O598S21 |
| Total Number of Atoms: | 6012 |
| Total number of positively charged residues (ARG + LYS): | 35 |
| Total number of negatively charged residues (ASP + GLU): | 47 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 67100 Absorption 0.1% (=1 g/l) 1.536, assuming all pairs of CYS residues form cystines Ext. coefficient 66350 Absorption 0.1% (=1 g/l) 1.519, assuming all CYS residues are reduced |
| Aromaticity: | 0.107 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 41.72 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.59, 27.81, 18.88] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.1327 |
| Grand average of hydropathicity (GRAVY): | -0.31 |