Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5788 |
| Number of amino acids: | 332 |
| Molecular Weight: | 38390.48 Da |
| Theoretical pI: | 5.21 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 3 | 0.9% |
| Cysteine CYS (C) | 10 | 3.01% |
| Glutamic Acid GLU (E) | 33 | 9.94% |
| Aspartic Acid ASP (D) | 19 | 5.72% |
| Glycine GLY (G) | 12 | 3.61% |
| Phynylalanine PHE (F) | 18 | 5.42% |
| Isoleucine ILE (I) | 28 | 8.43% |
| Histidine HIS (H) | 15 | 4.52% |
| Lysine LYS (K) | 14 | 4.22% |
| Methionine MET (M) | 6 | 1.81% |
| Leucine LEU (L) | 30 | 9.04% |
| Asparagine ASN (N) | 14 | 4.22% |
| Glutamine GLN (Q) | 7 | 2.11% |
| Proline PRO (P) | 21 | 6.33% |
| Serine SER (S) | 29 | 8.73% |
| Arginine ARG (R) | 19 | 5.72% |
| Threonine THR (T) | 28 | 8.43% |
| Tryptophan TRP (W) | 3 | 0.9% |
| Valine VAL (V) | 16 | 4.82% |
| Tyrosine TYR (Y) | 7 | 2.11% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1703 |
| Hydrogen | H | 2649 |
| Nitrogen | N | 457 |
| Oxygen | O | 522 |
| Sulphur | S | 16 |
| Formula | C1703H2649N457O522S16 |
| Total Number of Atoms: | 5347 |
| Total number of positively charged residues (ARG + LYS): | 33 |
| Total number of negatively charged residues (ASP + GLU): | 52 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 27555 Absorption 0.1% (=1 g/l) 0.718, assuming all pairs of CYS residues form cystines Ext. coefficient 26930 Absorption 0.1% (=1 g/l) 0.701, assuming all CYS residues are reduced |
| Aromaticity: | 0.084 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 57.73 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.72, 22.89, 21.69] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 83.012 |
| Grand average of hydropathicity (GRAVY): | -0.41 |