Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5743 |
| Number of amino acids: | 378 |
| Molecular Weight: | 41880.3 Da |
| Theoretical pI: | 8.13 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 19 | 5.03% |
| Cysteine CYS (C) | 9 | 2.38% |
| Glutamic Acid GLU (E) | 17 | 4.5% |
| Aspartic Acid ASP (D) | 23 | 6.08% |
| Glycine GLY (G) | 24 | 6.35% |
| Phynylalanine PHE (F) | 21 | 5.56% |
| Isoleucine ILE (I) | 15 | 3.97% |
| Histidine HIS (H) | 9 | 2.38% |
| Lysine LYS (K) | 9 | 2.38% |
| Methionine MET (M) | 6 | 1.59% |
| Leucine LEU (L) | 38 | 10.05% |
| Asparagine ASN (N) | 12 | 3.17% |
| Glutamine GLN (Q) | 11 | 2.91% |
| Proline PRO (P) | 21 | 5.56% |
| Serine SER (S) | 49 | 12.96% |
| Arginine ARG (R) | 33 | 8.73% |
| Threonine THR (T) | 28 | 7.41% |
| Tryptophan TRP (W) | 4 | 1.06% |
| Valine VAL (V) | 25 | 6.61% |
| Tyrosine TYR (Y) | 5 | 1.32% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1833 |
| Hydrogen | H | 2899 |
| Nitrogen | N | 531 |
| Oxygen | O | 564 |
| Sulphur | S | 15 |
| Formula | C1833H2899N531O564S15 |
| Total Number of Atoms: | 5842 |
| Total number of positively charged residues (ARG + LYS): | 42 |
| Total number of negatively charged residues (ASP + GLU): | 40 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 29950 Absorption 0.1% (=1 g/l) 0.715, assuming all pairs of CYS residues form cystines Ext. coefficient 29450 Absorption 0.1% (=1 g/l) 0.703, assuming all CYS residues are reduced |
| Aromaticity: | 0.079 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 54.96 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.57, 28.04, 21.16] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.8888 |
| Grand average of hydropathicity (GRAVY): | -0.27 |