Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5740 |
| Number of amino acids: | 331 |
| Molecular Weight: | 35678.88 Da |
| Theoretical pI: | 9.47 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 22 | 6.65% |
| Cysteine CYS (C) | 8 | 2.42% |
| Glutamic Acid GLU (E) | 14 | 4.23% |
| Aspartic Acid ASP (D) | 17 | 5.14% |
| Glycine GLY (G) | 35 | 10.57% |
| Phynylalanine PHE (F) | 14 | 4.23% |
| Isoleucine ILE (I) | 14 | 4.23% |
| Histidine HIS (H) | 6 | 1.81% |
| Lysine LYS (K) | 11 | 3.32% |
| Methionine MET (M) | 4 | 1.21% |
| Leucine LEU (L) | 33 | 9.97% |
| Asparagine ASN (N) | 14 | 4.23% |
| Glutamine GLN (Q) | 10 | 3.02% |
| Proline PRO (P) | 15 | 4.53% |
| Serine SER (S) | 26 | 7.85% |
| Arginine ARG (R) | 30 | 9.06% |
| Threonine THR (T) | 19 | 5.74% |
| Tryptophan TRP (W) | 2 | 0.6% |
| Valine VAL (V) | 35 | 10.57% |
| Tyrosine TYR (Y) | 2 | 0.6% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1558 |
| Hydrogen | H | 2538 |
| Nitrogen | N | 470 |
| Oxygen | O | 465 |
| Sulphur | S | 12 |
| Formula | C1558H2538N470O465S12 |
| Total Number of Atoms: | 5043 |
| Total number of positively charged residues (ARG + LYS): | 41 |
| Total number of negatively charged residues (ASP + GLU): | 31 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 14480 Absorption 0.1% (=1 g/l) 0.406, assuming all pairs of CYS residues form cystines Ext. coefficient 13980 Absorption 0.1% (=1 g/l) 0.392, assuming all CYS residues are reduced |
| Aromaticity: | 0.054 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 48.79 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.21, 27.19, 22.05] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 92.6888 |
| Grand average of hydropathicity (GRAVY): | -0.07 |