Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5725 |
| Number of amino acids: | 321 |
| Molecular Weight: | 34950.4 Da |
| Theoretical pI: | 9.16 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 23 | 7.17% |
| Cysteine CYS (C) | 9 | 2.8% |
| Glutamic Acid GLU (E) | 11 | 3.43% |
| Aspartic Acid ASP (D) | 21 | 6.54% |
| Glycine GLY (G) | 28 | 8.72% |
| Phynylalanine PHE (F) | 18 | 5.61% |
| Isoleucine ILE (I) | 12 | 3.74% |
| Histidine HIS (H) | 4 | 1.25% |
| Lysine LYS (K) | 24 | 7.48% |
| Methionine MET (M) | 9 | 2.8% |
| Leucine LEU (L) | 36 | 11.22% |
| Asparagine ASN (N) | 15 | 4.67% |
| Glutamine GLN (Q) | 7 | 2.18% |
| Proline PRO (P) | 13 | 4.05% |
| Serine SER (S) | 26 | 8.1% |
| Arginine ARG (R) | 18 | 5.61% |
| Threonine THR (T) | 18 | 5.61% |
| Tryptophan TRP (W) | 1 | 0.31% |
| Valine VAL (V) | 23 | 7.17% |
| Tyrosine TYR (Y) | 5 | 1.56% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1543 |
| Hydrogen | H | 2486 |
| Nitrogen | N | 430 |
| Oxygen | O | 457 |
| Sulphur | S | 18 |
| Formula | C1543H2486N430O457S18 |
| Total Number of Atoms: | 4934 |
| Total number of positively charged residues (ARG + LYS): | 42 |
| Total number of negatively charged residues (ASP + GLU): | 32 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 13450 Absorption 0.1% (=1 g/l) 0.385, assuming all pairs of CYS residues form cystines Ext. coefficient 12950 Absorption 0.1% (=1 g/l) 0.371, assuming all CYS residues are reduced |
| Aromaticity: | 0.075 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 39.81 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.59, 25.55, 24.61] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 86.2619 |
| Grand average of hydropathicity (GRAVY): | -0.10 |