Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5718 |
| Number of amino acids: | 325 |
| Molecular Weight: | 35626.65 Da |
| Theoretical pI: | 9.49 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 27 | 8.31% |
| Cysteine CYS (C) | 9 | 2.77% |
| Glutamic Acid GLU (E) | 8 | 2.46% |
| Aspartic Acid ASP (D) | 20 | 6.15% |
| Glycine GLY (G) | 23 | 7.08% |
| Phynylalanine PHE (F) | 16 | 4.92% |
| Isoleucine ILE (I) | 17 | 5.23% |
| Histidine HIS (H) | 3 | 0.92% |
| Lysine LYS (K) | 6 | 1.85% |
| Methionine MET (M) | 7 | 2.15% |
| Leucine LEU (L) | 32 | 9.85% |
| Asparagine ASN (N) | 16 | 4.92% |
| Glutamine GLN (Q) | 11 | 3.38% |
| Proline PRO (P) | 12 | 3.69% |
| Serine SER (S) | 36 | 11.08% |
| Arginine ARG (R) | 33 | 10.15% |
| Threonine THR (T) | 17 | 5.23% |
| Tryptophan TRP (W) | 1 | 0.31% |
| Valine VAL (V) | 24 | 7.38% |
| Tyrosine TYR (Y) | 7 | 2.15% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1548 |
| Hydrogen | H | 2498 |
| Nitrogen | N | 464 |
| Oxygen | O | 469 |
| Sulphur | S | 16 |
| Formula | C1548H2498N464O469S16 |
| Total Number of Atoms: | 4995 |
| Total number of positively charged residues (ARG + LYS): | 39 |
| Total number of negatively charged residues (ASP + GLU): | 28 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 16430 Absorption 0.1% (=1 g/l) 0.461, assuming all pairs of CYS residues form cystines Ext. coefficient 15930 Absorption 0.1% (=1 g/l) 0.447, assuming all CYS residues are reduced |
| Aromaticity: | 0.074 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 52.61 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.85, 26.77, 22.77] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 88.5231 |
| Grand average of hydropathicity (GRAVY): | -0.08 |