Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5650 |
| Number of amino acids: | 490 |
| Molecular Weight: | 53824.15 Da |
| Theoretical pI: | 6.91 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 33 | 6.73% |
| Cysteine CYS (C) | 5 | 1.02% |
| Glutamic Acid GLU (E) | 23 | 4.69% |
| Aspartic Acid ASP (D) | 20 | 4.08% |
| Glycine GLY (G) | 48 | 9.8% |
| Phynylalanine PHE (F) | 21 | 4.29% |
| Isoleucine ILE (I) | 23 | 4.69% |
| Histidine HIS (H) | 11 | 2.24% |
| Lysine LYS (K) | 13 | 2.65% |
| Methionine MET (M) | 4 | 0.82% |
| Leucine LEU (L) | 44 | 8.98% |
| Asparagine ASN (N) | 28 | 5.71% |
| Glutamine GLN (Q) | 55 | 11.22% |
| Proline PRO (P) | 26 | 5.31% |
| Serine SER (S) | 38 | 7.76% |
| Arginine ARG (R) | 29 | 5.92% |
| Threonine THR (T) | 21 | 4.29% |
| Tryptophan TRP (W) | 5 | 1.02% |
| Valine VAL (V) | 33 | 6.73% |
| Tyrosine TYR (Y) | 10 | 2.04% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2359 |
| Hydrogen | H | 3704 |
| Nitrogen | N | 700 |
| Oxygen | O | 729 |
| Sulphur | S | 9 |
| Formula | C2359H3704N700O729S9 |
| Total Number of Atoms: | 7501 |
| Total number of positively charged residues (ARG + LYS): | 42 |
| Total number of negatively charged residues (ASP + GLU): | 43 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 42650 Absorption 0.1% (=1 g/l) 0.792, assuming all pairs of CYS residues form cystines Ext. coefficient 42400 Absorption 0.1% (=1 g/l) 0.788, assuming all CYS residues are reduced |
| Aromaticity: | 0.073 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 48.17 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.76, 28.57, 21.22] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 79.5918 |
| Grand average of hydropathicity (GRAVY): | -0.48 |