Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5649 |
| Number of amino acids: | 486 |
| Molecular Weight: | 53827.96 Da |
| Theoretical pI: | 5.85 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 35 | 7.2% |
| Cysteine CYS (C) | 9 | 1.85% |
| Glutamic Acid GLU (E) | 32 | 6.58% |
| Aspartic Acid ASP (D) | 26 | 5.35% |
| Glycine GLY (G) | 40 | 8.23% |
| Phynylalanine PHE (F) | 11 | 2.26% |
| Isoleucine ILE (I) | 20 | 4.12% |
| Histidine HIS (H) | 18 | 3.7% |
| Lysine LYS (K) | 29 | 5.97% |
| Methionine MET (M) | 16 | 3.29% |
| Leucine LEU (L) | 43 | 8.85% |
| Asparagine ASN (N) | 25 | 5.14% |
| Glutamine GLN (Q) | 10 | 2.06% |
| Proline PRO (P) | 25 | 5.14% |
| Serine SER (S) | 34 | 7% |
| Arginine ARG (R) | 17 | 3.5% |
| Threonine THR (T) | 28 | 5.76% |
| Tryptophan TRP (W) | 4 | 0.82% |
| Valine VAL (V) | 35 | 7.2% |
| Tyrosine TYR (Y) | 29 | 5.97% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2386 |
| Hydrogen | H | 3697 |
| Nitrogen | N | 641 |
| Oxygen | O | 729 |
| Sulphur | S | 25 |
| Formula | C2386H3697N641O729S25 |
| Total Number of Atoms: | 7478 |
| Total number of positively charged residues (ARG + LYS): | 46 |
| Total number of negatively charged residues (ASP + GLU): | 58 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 65710 Absorption 0.1% (=1 g/l) 1.221, assuming all pairs of CYS residues form cystines Ext. coefficient 65210 Absorption 0.1% (=1 g/l) 1.211, assuming all CYS residues are reduced |
| Aromaticity: | 0.091 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.76 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.22, 25.51, 25.93] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.642 |
| Grand average of hydropathicity (GRAVY): | -0.35 |