Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5611 |
| Number of amino acids: | 261 |
| Molecular Weight: | 28685.6 Da |
| Theoretical pI: | 9.1 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 24 | 9.2% |
| Cysteine CYS (C) | 7 | 2.68% |
| Glutamic Acid GLU (E) | 5 | 1.92% |
| Aspartic Acid ASP (D) | 11 | 4.21% |
| Glycine GLY (G) | 26 | 9.96% |
| Phynylalanine PHE (F) | 11 | 4.21% |
| Isoleucine ILE (I) | 9 | 3.45% |
| Histidine HIS (H) | 6 | 2.3% |
| Lysine LYS (K) | 7 | 2.68% |
| Methionine MET (M) | 9 | 3.45% |
| Leucine LEU (L) | 16 | 6.13% |
| Asparagine ASN (N) | 17 | 6.51% |
| Glutamine GLN (Q) | 12 | 4.6% |
| Proline PRO (P) | 16 | 6.13% |
| Serine SER (S) | 16 | 6.13% |
| Arginine ARG (R) | 16 | 6.13% |
| Threonine THR (T) | 14 | 5.36% |
| Tryptophan TRP (W) | 6 | 2.3% |
| Valine VAL (V) | 21 | 8.05% |
| Tyrosine TYR (Y) | 12 | 4.6% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1273 |
| Hydrogen | H | 1943 |
| Nitrogen | N | 363 |
| Oxygen | O | 365 |
| Sulphur | S | 16 |
| Formula | C1273H1943N363O365S16 |
| Total Number of Atoms: | 3960 |
| Total number of positively charged residues (ARG + LYS): | 23 |
| Total number of negatively charged residues (ASP + GLU): | 16 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 51255 Absorption 0.1% (=1 g/l) 1.787, assuming all pairs of CYS residues form cystines Ext. coefficient 50880 Absorption 0.1% (=1 g/l) 1.774, assuming all CYS residues are reduced |
| Aromaticity: | 0.111 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 29.93 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.74, 28.74, 20.69] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 69.8851 |
| Grand average of hydropathicity (GRAVY): | -0.22 |