Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5609 |
| Number of amino acids: | 496 |
| Molecular Weight: | 54290.73 Da |
| Theoretical pI: | 8.73 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 33 | 6.65% |
| Cysteine CYS (C) | 5 | 1.01% |
| Glutamic Acid GLU (E) | 19 | 3.83% |
| Aspartic Acid ASP (D) | 20 | 4.03% |
| Glycine GLY (G) | 53 | 10.69% |
| Phynylalanine PHE (F) | 20 | 4.03% |
| Isoleucine ILE (I) | 24 | 4.84% |
| Histidine HIS (H) | 10 | 2.02% |
| Lysine LYS (K) | 15 | 3.02% |
| Methionine MET (M) | 6 | 1.21% |
| Leucine LEU (L) | 41 | 8.27% |
| Asparagine ASN (N) | 29 | 5.85% |
| Glutamine GLN (Q) | 61 | 12.3% |
| Proline PRO (P) | 25 | 5.04% |
| Serine SER (S) | 38 | 7.66% |
| Arginine ARG (R) | 28 | 5.65% |
| Threonine THR (T) | 19 | 3.83% |
| Tryptophan TRP (W) | 5 | 1.01% |
| Valine VAL (V) | 34 | 6.85% |
| Tyrosine TYR (Y) | 11 | 2.22% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2373 |
| Hydrogen | H | 3734 |
| Nitrogen | N | 710 |
| Oxygen | O | 733 |
| Sulphur | S | 11 |
| Formula | C2373H3734N710O733S11 |
| Total Number of Atoms: | 7561 |
| Total number of positively charged residues (ARG + LYS): | 43 |
| Total number of negatively charged residues (ASP + GLU): | 39 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 44140 Absorption 0.1% (=1 g/l) 0.813, assuming all pairs of CYS residues form cystines Ext. coefficient 43890 Absorption 0.1% (=1 g/l) 0.808, assuming all CYS residues are reduced |
| Aromaticity: | 0.073 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 43.30 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.22, 29.23, 19.96] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 77.6411 |
| Grand average of hydropathicity (GRAVY): | -0.50 |