Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5606 |
| Number of amino acids: | 501 |
| Molecular Weight: | 55418.74 Da |
| Theoretical pI: | 8.07 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 41 | 8.18% |
| Cysteine CYS (C) | 7 | 1.4% |
| Glutamic Acid GLU (E) | 16 | 3.19% |
| Aspartic Acid ASP (D) | 29 | 5.79% |
| Glycine GLY (G) | 38 | 7.58% |
| Phynylalanine PHE (F) | 24 | 4.79% |
| Isoleucine ILE (I) | 20 | 3.99% |
| Histidine HIS (H) | 14 | 2.79% |
| Lysine LYS (K) | 24 | 4.79% |
| Methionine MET (M) | 13 | 2.59% |
| Leucine LEU (L) | 51 | 10.18% |
| Asparagine ASN (N) | 24 | 4.79% |
| Glutamine GLN (Q) | 15 | 2.99% |
| Proline PRO (P) | 28 | 5.59% |
| Serine SER (S) | 54 | 10.78% |
| Arginine ARG (R) | 23 | 4.59% |
| Threonine THR (T) | 23 | 4.59% |
| Tryptophan TRP (W) | 7 | 1.4% |
| Valine VAL (V) | 24 | 4.79% |
| Tyrosine TYR (Y) | 26 | 5.19% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2485 |
| Hydrogen | H | 3800 |
| Nitrogen | N | 668 |
| Oxygen | O | 734 |
| Sulphur | S | 20 |
| Formula | C2485H3800N668O734S20 |
| Total Number of Atoms: | 7707 |
| Total number of positively charged residues (ARG + LYS): | 47 |
| Total number of negatively charged residues (ASP + GLU): | 45 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 77615 Absorption 0.1% (=1 g/l) 1.401, assuming all pairs of CYS residues form cystines Ext. coefficient 77240 Absorption 0.1% (=1 g/l) 1.394, assuming all CYS residues are reduced |
| Aromaticity: | 0.114 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.98 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.34, 28.74, 24.15] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 77.3452 |
| Grand average of hydropathicity (GRAVY): | -0.25 |