Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5597 |
| Number of amino acids: | 263 |
| Molecular Weight: | 28437.98 Da |
| Theoretical pI: | 5.52 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 21 | 7.98% |
| Cysteine CYS (C) | 7 | 2.66% |
| Glutamic Acid GLU (E) | 18 | 6.84% |
| Aspartic Acid ASP (D) | 19 | 7.22% |
| Glycine GLY (G) | 29 | 11.03% |
| Phynylalanine PHE (F) | 11 | 4.18% |
| Isoleucine ILE (I) | 11 | 4.18% |
| Histidine HIS (H) | 4 | 1.52% |
| Lysine LYS (K) | 26 | 9.89% |
| Methionine MET (M) | 3 | 1.14% |
| Leucine LEU (L) | 12 | 4.56% |
| Asparagine ASN (N) | 9 | 3.42% |
| Glutamine GLN (Q) | 2 | 0.76% |
| Proline PRO (P) | 16 | 6.08% |
| Serine SER (S) | 17 | 6.46% |
| Arginine ARG (R) | 6 | 2.28% |
| Threonine THR (T) | 18 | 6.84% |
| Tryptophan TRP (W) | 6 | 2.28% |
| Valine VAL (V) | 19 | 7.22% |
| Tyrosine TYR (Y) | 9 | 3.42% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1267 |
| Hydrogen | H | 1946 |
| Nitrogen | N | 332 |
| Oxygen | O | 393 |
| Sulphur | S | 10 |
| Formula | C1267H1946N332O393S10 |
| Total Number of Atoms: | 3948 |
| Total number of positively charged residues (ARG + LYS): | 32 |
| Total number of negatively charged residues (ASP + GLU): | 37 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 46785 Absorption 0.1% (=1 g/l) 1.645, assuming all pairs of CYS residues form cystines Ext. coefficient 46410 Absorption 0.1% (=1 g/l) 1.632, assuming all CYS residues are reduced |
| Aromaticity: | 0.099 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 24.92 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.86, 27.00, 20.53] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 63.0418 |
| Grand average of hydropathicity (GRAVY): | -0.47 |