Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5559 |
| Number of amino acids: | 620 |
| Molecular Weight: | 68591.62 Da |
| Theoretical pI: | 9.57 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 52 | 8.39% |
| Cysteine CYS (C) | 5 | 0.81% |
| Glutamic Acid GLU (E) | 15 | 2.42% |
| Aspartic Acid ASP (D) | 28 | 4.52% |
| Glycine GLY (G) | 54 | 8.71% |
| Phynylalanine PHE (F) | 27 | 4.35% |
| Isoleucine ILE (I) | 19 | 3.06% |
| Histidine HIS (H) | 11 | 1.77% |
| Lysine LYS (K) | 27 | 4.35% |
| Methionine MET (M) | 14 | 2.26% |
| Leucine LEU (L) | 53 | 8.55% |
| Asparagine ASN (N) | 32 | 5.16% |
| Glutamine GLN (Q) | 22 | 3.55% |
| Proline PRO (P) | 32 | 5.16% |
| Serine SER (S) | 63 | 10.16% |
| Arginine ARG (R) | 38 | 6.13% |
| Threonine THR (T) | 35 | 5.65% |
| Tryptophan TRP (W) | 13 | 2.1% |
| Valine VAL (V) | 44 | 7.1% |
| Tyrosine TYR (Y) | 36 | 5.81% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3081 |
| Hydrogen | H | 4714 |
| Nitrogen | N | 850 |
| Oxygen | O | 895 |
| Sulphur | S | 19 |
| Formula | C3081H4714N850O895S19 |
| Total Number of Atoms: | 9559 |
| Total number of positively charged residues (ARG + LYS): | 65 |
| Total number of negatively charged residues (ASP + GLU): | 43 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 125390 Absorption 0.1% (=1 g/l) 1.828, assuming all pairs of CYS residues form cystines Ext. coefficient 125140 Absorption 0.1% (=1 g/l) 1.824, assuming all CYS residues are reduced |
| Aromaticity: | 0.123 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.81 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.97, 29.19, 21.61] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.2581 |
| Grand average of hydropathicity (GRAVY): | -0.29 |