Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5530 |
| Number of amino acids: | 445 |
| Molecular Weight: | 50326.67 Da |
| Theoretical pI: | 5.44 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 28 | 6.29% |
| Cysteine CYS (C) | 2 | 0.45% |
| Glutamic Acid GLU (E) | 36 | 8.09% |
| Aspartic Acid ASP (D) | 23 | 5.17% |
| Glycine GLY (G) | 25 | 5.62% |
| Phynylalanine PHE (F) | 22 | 4.94% |
| Isoleucine ILE (I) | 21 | 4.72% |
| Histidine HIS (H) | 10 | 2.25% |
| Lysine LYS (K) | 20 | 4.49% |
| Methionine MET (M) | 5 | 1.12% |
| Leucine LEU (L) | 57 | 12.81% |
| Asparagine ASN (N) | 29 | 6.52% |
| Glutamine GLN (Q) | 26 | 5.84% |
| Proline PRO (P) | 21 | 4.72% |
| Serine SER (S) | 38 | 8.54% |
| Arginine ARG (R) | 27 | 6.07% |
| Threonine THR (T) | 15 | 3.37% |
| Tryptophan TRP (W) | 1 | 0.22% |
| Valine VAL (V) | 24 | 5.39% |
| Tyrosine TYR (Y) | 15 | 3.37% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2236 |
| Hydrogen | H | 3514 |
| Nitrogen | N | 622 |
| Oxygen | O | 687 |
| Sulphur | S | 7 |
| Formula | C2236H3514N622O687S7 |
| Total Number of Atoms: | 7066 |
| Total number of positively charged residues (ARG + LYS): | 47 |
| Total number of negatively charged residues (ASP + GLU): | 59 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 27975 Absorption 0.1% (=1 g/l) 0.556, assuming all pairs of CYS residues form cystines Ext. coefficient 27850 Absorption 0.1% (=1 g/l) 0.553, assuming all CYS residues are reduced |
| Aromaticity: | 0.085 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 53.36 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.46, 25.39, 28.31] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 90.2922 |
| Grand average of hydropathicity (GRAVY): | -0.44 |