Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5529 |
| Number of amino acids: | 259 |
| Molecular Weight: | 27137.74 Da |
| Theoretical pI: | 9.78 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 31 | 11.97% |
| Cysteine CYS (C) | 9 | 3.47% |
| Glutamic Acid GLU (E) | 3 | 1.16% |
| Aspartic Acid ASP (D) | 8 | 3.09% |
| Glycine GLY (G) | 41 | 15.83% |
| Phynylalanine PHE (F) | 12 | 4.63% |
| Isoleucine ILE (I) | 2 | 0.77% |
| Histidine HIS (H) | 5 | 1.93% |
| Lysine LYS (K) | 3 | 1.16% |
| Methionine MET (M) | 3 | 1.16% |
| Leucine LEU (L) | 26 | 10.04% |
| Asparagine ASN (N) | 11 | 4.25% |
| Glutamine GLN (Q) | 9 | 3.47% |
| Proline PRO (P) | 13 | 5.02% |
| Serine SER (S) | 18 | 6.95% |
| Arginine ARG (R) | 21 | 8.11% |
| Threonine THR (T) | 14 | 5.41% |
| Tryptophan TRP (W) | 6 | 2.32% |
| Valine VAL (V) | 16 | 6.18% |
| Tyrosine TYR (Y) | 8 | 3.09% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1196 |
| Hydrogen | H | 1845 |
| Nitrogen | N | 361 |
| Oxygen | O | 342 |
| Sulphur | S | 12 |
| Formula | C1196H1845N361O342S12 |
| Total Number of Atoms: | 3756 |
| Total number of positively charged residues (ARG + LYS): | 24 |
| Total number of negatively charged residues (ASP + GLU): | 11 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 45420 Absorption 0.1% (=1 g/l) 1.674, assuming all pairs of CYS residues form cystines Ext. coefficient 44920 Absorption 0.1% (=1 g/l) 1.655, assuming all CYS residues are reduced |
| Aromaticity: | 0.100 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 51.92 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.03, 32.05, 24.32] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 72.0463 |
| Grand average of hydropathicity (GRAVY): | -0.06 |