Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5492 |
| Number of amino acids: | 361 |
| Molecular Weight: | 39819.14 Da |
| Theoretical pI: | 7.19 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 21 | 5.82% |
| Cysteine CYS (C) | 12 | 3.32% |
| Glutamic Acid GLU (E) | 21 | 5.82% |
| Aspartic Acid ASP (D) | 19 | 5.26% |
| Glycine GLY (G) | 34 | 9.42% |
| Phynylalanine PHE (F) | 18 | 4.99% |
| Isoleucine ILE (I) | 15 | 4.16% |
| Histidine HIS (H) | 9 | 2.49% |
| Lysine LYS (K) | 23 | 6.37% |
| Methionine MET (M) | 6 | 1.66% |
| Leucine LEU (L) | 29 | 8.03% |
| Asparagine ASN (N) | 15 | 4.16% |
| Glutamine GLN (Q) | 11 | 3.05% |
| Proline PRO (P) | 12 | 3.32% |
| Serine SER (S) | 35 | 9.7% |
| Arginine ARG (R) | 17 | 4.71% |
| Threonine THR (T) | 17 | 4.71% |
| Tryptophan TRP (W) | 5 | 1.39% |
| Valine VAL (V) | 29 | 8.03% |
| Tyrosine TYR (Y) | 13 | 3.6% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1763 |
| Hydrogen | H | 2738 |
| Nitrogen | N | 484 |
| Oxygen | O | 533 |
| Sulphur | S | 18 |
| Formula | C1763H2738N484O533S18 |
| Total Number of Atoms: | 5536 |
| Total number of positively charged residues (ARG + LYS): | 40 |
| Total number of negatively charged residues (ASP + GLU): | 40 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 47620 Absorption 0.1% (=1 g/l) 1.196, assuming all pairs of CYS residues form cystines Ext. coefficient 46870 Absorption 0.1% (=1 g/l) 1.177, assuming all CYS residues are reduced |
| Aromaticity: | 0.100 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.35 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.19, 26.59, 21.33] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 76.6482 |
| Grand average of hydropathicity (GRAVY): | -0.25 |