Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5485 |
| Number of amino acids: | 262 |
| Molecular Weight: | 28387.35 Da |
| Theoretical pI: | 8.96 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 25 | 9.54% |
| Cysteine CYS (C) | 9 | 3.44% |
| Glutamic Acid GLU (E) | 1 | 0.38% |
| Aspartic Acid ASP (D) | 13 | 4.96% |
| Glycine GLY (G) | 28 | 10.69% |
| Phynylalanine PHE (F) | 14 | 5.34% |
| Isoleucine ILE (I) | 13 | 4.96% |
| Histidine HIS (H) | 4 | 1.53% |
| Lysine LYS (K) | 12 | 4.58% |
| Methionine MET (M) | 8 | 3.05% |
| Leucine LEU (L) | 13 | 4.96% |
| Asparagine ASN (N) | 14 | 5.34% |
| Glutamine GLN (Q) | 11 | 4.2% |
| Proline PRO (P) | 16 | 6.11% |
| Serine SER (S) | 17 | 6.49% |
| Arginine ARG (R) | 9 | 3.44% |
| Threonine THR (T) | 22 | 8.4% |
| Tryptophan TRP (W) | 9 | 3.44% |
| Valine VAL (V) | 15 | 5.73% |
| Tyrosine TYR (Y) | 9 | 3.44% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1272 |
| Hydrogen | H | 1921 |
| Nitrogen | N | 343 |
| Oxygen | O | 364 |
| Sulphur | S | 17 |
| Formula | C1272H1921N343O364S17 |
| Total Number of Atoms: | 3917 |
| Total number of positively charged residues (ARG + LYS): | 21 |
| Total number of negatively charged residues (ASP + GLU): | 14 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 63410 Absorption 0.1% (=1 g/l) 2.234, assuming all pairs of CYS residues form cystines Ext. coefficient 62910 Absorption 0.1% (=1 g/l) 2.216, assuming all CYS residues are reduced |
| Aromaticity: | 0.122 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 26.90 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.86, 28.63, 17.94] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 64.8473 |
| Grand average of hydropathicity (GRAVY): | -0.11 |