Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5477 |
| Number of amino acids: | 465 |
| Molecular Weight: | 52451.76 Da |
| Theoretical pI: | 5.15 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 30 | 6.45% |
| Cysteine CYS (C) | 9 | 1.94% |
| Glutamic Acid GLU (E) | 26 | 5.59% |
| Aspartic Acid ASP (D) | 26 | 5.59% |
| Glycine GLY (G) | 34 | 7.31% |
| Phynylalanine PHE (F) | 25 | 5.38% |
| Isoleucine ILE (I) | 19 | 4.09% |
| Histidine HIS (H) | 10 | 2.15% |
| Lysine LYS (K) | 19 | 4.09% |
| Methionine MET (M) | 7 | 1.51% |
| Leucine LEU (L) | 40 | 8.6% |
| Asparagine ASN (N) | 35 | 7.53% |
| Glutamine GLN (Q) | 10 | 2.15% |
| Proline PRO (P) | 28 | 6.02% |
| Serine SER (S) | 38 | 8.17% |
| Arginine ARG (R) | 18 | 3.87% |
| Threonine THR (T) | 24 | 5.16% |
| Tryptophan TRP (W) | 14 | 3.01% |
| Valine VAL (V) | 28 | 6.02% |
| Tyrosine TYR (Y) | 25 | 5.38% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2374 |
| Hydrogen | H | 3523 |
| Nitrogen | N | 617 |
| Oxygen | O | 702 |
| Sulphur | S | 16 |
| Formula | C2374H3523N617O702S16 |
| Total Number of Atoms: | 7232 |
| Total number of positively charged residues (ARG + LYS): | 37 |
| Total number of negatively charged residues (ASP + GLU): | 52 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 114750 Absorption 0.1% (=1 g/l) 2.188, assuming all pairs of CYS residues form cystines Ext. coefficient 114250 Absorption 0.1% (=1 g/l) 2.178, assuming all CYS residues are reduced |
| Aromaticity: | 0.138 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 39.22 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.47, 29.03, 22.15] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 73.3979 |
| Grand average of hydropathicity (GRAVY): | -0.35 |