Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5476 |
| Number of amino acids: | 351 |
| Molecular Weight: | 38645.86 Da |
| Theoretical pI: | 5.75 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 7.41% |
| Cysteine CYS (C) | 9 | 2.56% |
| Glutamic Acid GLU (E) | 8 | 2.28% |
| Aspartic Acid ASP (D) | 25 | 7.12% |
| Glycine GLY (G) | 18 | 5.13% |
| Phynylalanine PHE (F) | 22 | 6.27% |
| Isoleucine ILE (I) | 17 | 4.84% |
| Histidine HIS (H) | 5 | 1.42% |
| Lysine LYS (K) | 9 | 2.56% |
| Methionine MET (M) | 5 | 1.42% |
| Leucine LEU (L) | 40 | 11.4% |
| Asparagine ASN (N) | 25 | 7.12% |
| Glutamine GLN (Q) | 15 | 4.27% |
| Proline PRO (P) | 19 | 5.41% |
| Serine SER (S) | 29 | 8.26% |
| Arginine ARG (R) | 20 | 5.7% |
| Threonine THR (T) | 28 | 7.98% |
| Tryptophan TRP (W) | 2 | 0.57% |
| Valine VAL (V) | 23 | 6.55% |
| Tyrosine TYR (Y) | 6 | 1.71% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1710 |
| Hydrogen | H | 2690 |
| Nitrogen | N | 472 |
| Oxygen | O | 521 |
| Sulphur | S | 14 |
| Formula | C1710H2690N472O521S14 |
| Total Number of Atoms: | 5407 |
| Total number of positively charged residues (ARG + LYS): | 29 |
| Total number of negatively charged residues (ASP + GLU): | 33 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 20440 Absorption 0.1% (=1 g/l) 0.529, assuming all pairs of CYS residues form cystines Ext. coefficient 19940 Absorption 0.1% (=1 g/l) 0.516, assuming all CYS residues are reduced |
| Aromaticity: | 0.085 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 43.34 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.34, 25.93, 22.51] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 89.7435 |
| Grand average of hydropathicity (GRAVY): | -0.06 |