Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5474 |
| Number of amino acids: | 336 |
| Molecular Weight: | 37426.72 Da |
| Theoretical pI: | 8.74 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 7.74% |
| Cysteine CYS (C) | 10 | 2.98% |
| Glutamic Acid GLU (E) | 17 | 5.06% |
| Aspartic Acid ASP (D) | 16 | 4.76% |
| Glycine GLY (G) | 22 | 6.55% |
| Phynylalanine PHE (F) | 21 | 6.25% |
| Isoleucine ILE (I) | 20 | 5.95% |
| Histidine HIS (H) | 7 | 2.08% |
| Lysine LYS (K) | 19 | 5.65% |
| Methionine MET (M) | 6 | 1.79% |
| Leucine LEU (L) | 35 | 10.42% |
| Asparagine ASN (N) | 17 | 5.06% |
| Glutamine GLN (Q) | 15 | 4.46% |
| Proline PRO (P) | 15 | 4.46% |
| Serine SER (S) | 33 | 9.82% |
| Arginine ARG (R) | 20 | 5.95% |
| Threonine THR (T) | 15 | 4.46% |
| Tryptophan TRP (W) | 1 | 0.3% |
| Valine VAL (V) | 11 | 3.27% |
| Tyrosine TYR (Y) | 10 | 2.98% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1659 |
| Hydrogen | H | 2608 |
| Nitrogen | N | 462 |
| Oxygen | O | 493 |
| Sulphur | S | 16 |
| Formula | C1659H2608N462O493S16 |
| Total Number of Atoms: | 5238 |
| Total number of positively charged residues (ARG + LYS): | 39 |
| Total number of negatively charged residues (ASP + GLU): | 33 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 21025 Absorption 0.1% (=1 g/l) 0.562, assuming all pairs of CYS residues form cystines Ext. coefficient 20400 Absorption 0.1% (=1 g/l) 0.545, assuming all CYS residues are reduced |
| Aromaticity: | 0.095 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 59.48 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.17, 25.89, 25.00] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.0716 |
| Grand average of hydropathicity (GRAVY): | -0.26 |