Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5468 |
| Number of amino acids: | 376 |
| Molecular Weight: | 41540.89 Da |
| Theoretical pI: | 5.08 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 6.91% |
| Cysteine CYS (C) | 7 | 1.86% |
| Glutamic Acid GLU (E) | 32 | 8.51% |
| Aspartic Acid ASP (D) | 18 | 4.79% |
| Glycine GLY (G) | 36 | 9.57% |
| Phynylalanine PHE (F) | 13 | 3.46% |
| Isoleucine ILE (I) | 18 | 4.79% |
| Histidine HIS (H) | 5 | 1.33% |
| Lysine LYS (K) | 21 | 5.59% |
| Methionine MET (M) | 7 | 1.86% |
| Leucine LEU (L) | 33 | 8.78% |
| Asparagine ASN (N) | 20 | 5.32% |
| Glutamine GLN (Q) | 10 | 2.66% |
| Proline PRO (P) | 10 | 2.66% |
| Serine SER (S) | 31 | 8.24% |
| Arginine ARG (R) | 17 | 4.52% |
| Threonine THR (T) | 16 | 4.26% |
| Tryptophan TRP (W) | 8 | 2.13% |
| Valine VAL (V) | 33 | 8.78% |
| Tyrosine TYR (Y) | 15 | 3.99% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1844 |
| Hydrogen | H | 2870 |
| Nitrogen | N | 496 |
| Oxygen | O | 569 |
| Sulphur | S | 14 |
| Formula | C1844H2870N496O569S14 |
| Total Number of Atoms: | 5793 |
| Total number of positively charged residues (ARG + LYS): | 38 |
| Total number of negatively charged residues (ASP + GLU): | 50 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 66725 Absorption 0.1% (=1 g/l) 1.606, assuming all pairs of CYS residues form cystines Ext. coefficient 66350 Absorption 0.1% (=1 g/l) 1.597, assuming all CYS residues are reduced |
| Aromaticity: | 0.096 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 28.79 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.91, 25.80, 26.06] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 85.266 |
| Grand average of hydropathicity (GRAVY): | -0.23 |