Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5446 |
| Number of amino acids: | 528 |
| Molecular Weight: | 57961.43 Da |
| Theoretical pI: | 6.19 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 24 | 4.55% |
| Cysteine CYS (C) | 16 | 3.03% |
| Glutamic Acid GLU (E) | 26 | 4.92% |
| Aspartic Acid ASP (D) | 22 | 4.17% |
| Glycine GLY (G) | 37 | 7.01% |
| Phynylalanine PHE (F) | 26 | 4.92% |
| Isoleucine ILE (I) | 25 | 4.73% |
| Histidine HIS (H) | 9 | 1.7% |
| Lysine LYS (K) | 25 | 4.73% |
| Methionine MET (M) | 11 | 2.08% |
| Leucine LEU (L) | 53 | 10.04% |
| Asparagine ASN (N) | 25 | 4.73% |
| Glutamine GLN (Q) | 21 | 3.98% |
| Proline PRO (P) | 30 | 5.68% |
| Serine SER (S) | 82 | 15.53% |
| Arginine ARG (R) | 19 | 3.6% |
| Threonine THR (T) | 26 | 4.92% |
| Tryptophan TRP (W) | 6 | 1.14% |
| Valine VAL (V) | 25 | 4.73% |
| Tyrosine TYR (Y) | 20 | 3.79% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2563 |
| Hydrogen | H | 3972 |
| Nitrogen | N | 680 |
| Oxygen | O | 799 |
| Sulphur | S | 27 |
| Formula | C2563H3972N680O799S27 |
| Total Number of Atoms: | 8041 |
| Total number of positively charged residues (ARG + LYS): | 44 |
| Total number of negatively charged residues (ASP + GLU): | 48 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 63800 Absorption 0.1% (=1 g/l) 1.101, assuming all pairs of CYS residues form cystines Ext. coefficient 62800 Absorption 0.1% (=1 g/l) 1.083, assuming all CYS residues are reduced |
| Aromaticity: | 0.098 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 54.77 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.36, 32.95, 21.59] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 75.8902 |
| Grand average of hydropathicity (GRAVY): | -0.23 |