Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5441 |
| Number of amino acids: | 322 |
| Molecular Weight: | 34345.43 Da |
| Theoretical pI: | 6.22 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 22 | 6.83% |
| Cysteine CYS (C) | 17 | 5.28% |
| Glutamic Acid GLU (E) | 8 | 2.48% |
| Aspartic Acid ASP (D) | 15 | 4.66% |
| Glycine GLY (G) | 46 | 14.29% |
| Phynylalanine PHE (F) | 17 | 5.28% |
| Isoleucine ILE (I) | 15 | 4.66% |
| Histidine HIS (H) | 5 | 1.55% |
| Lysine LYS (K) | 6 | 1.86% |
| Methionine MET (M) | 5 | 1.55% |
| Leucine LEU (L) | 21 | 6.52% |
| Asparagine ASN (N) | 20 | 6.21% |
| Glutamine GLN (Q) | 15 | 4.66% |
| Proline PRO (P) | 22 | 6.83% |
| Serine SER (S) | 27 | 8.39% |
| Arginine ARG (R) | 15 | 4.66% |
| Threonine THR (T) | 16 | 4.97% |
| Tryptophan TRP (W) | 7 | 2.17% |
| Valine VAL (V) | 12 | 3.73% |
| Tyrosine TYR (Y) | 11 | 3.42% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1505 |
| Hydrogen | H | 2265 |
| Nitrogen | N | 425 |
| Oxygen | O | 458 |
| Sulphur | S | 22 |
| Formula | C1505H2265N425O458S22 |
| Total Number of Atoms: | 4675 |
| Total number of positively charged residues (ARG + LYS): | 21 |
| Total number of negatively charged residues (ASP + GLU): | 23 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 55890 Absorption 0.1% (=1 g/l) 1.627, assuming all pairs of CYS residues form cystines Ext. coefficient 54890 Absorption 0.1% (=1 g/l) 1.598, assuming all CYS residues are reduced |
| Aromaticity: | 0.109 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.94 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.78, 35.71, 17.39] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 61.2423 |
| Grand average of hydropathicity (GRAVY): | -0.25 |