Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5439 |
| Number of amino acids: | 465 |
| Molecular Weight: | 51376.91 Da |
| Theoretical pI: | 7.88 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 31 | 6.67% |
| Cysteine CYS (C) | 5 | 1.08% |
| Glutamic Acid GLU (E) | 22 | 4.73% |
| Aspartic Acid ASP (D) | 13 | 2.8% |
| Glycine GLY (G) | 46 | 9.89% |
| Phynylalanine PHE (F) | 26 | 5.59% |
| Isoleucine ILE (I) | 21 | 4.52% |
| Histidine HIS (H) | 9 | 1.94% |
| Lysine LYS (K) | 15 | 3.23% |
| Methionine MET (M) | 8 | 1.72% |
| Leucine LEU (L) | 44 | 9.46% |
| Asparagine ASN (N) | 35 | 7.53% |
| Glutamine GLN (Q) | 53 | 11.4% |
| Proline PRO (P) | 26 | 5.59% |
| Serine SER (S) | 25 | 5.38% |
| Arginine ARG (R) | 21 | 4.52% |
| Threonine THR (T) | 23 | 4.95% |
| Tryptophan TRP (W) | 6 | 1.29% |
| Valine VAL (V) | 28 | 6.02% |
| Tyrosine TYR (Y) | 8 | 1.72% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2276 |
| Hydrogen | H | 3541 |
| Nitrogen | N | 655 |
| Oxygen | O | 680 |
| Sulphur | S | 13 |
| Formula | C2276H3541N655O680S13 |
| Total Number of Atoms: | 7165 |
| Total number of positively charged residues (ARG + LYS): | 36 |
| Total number of negatively charged residues (ASP + GLU): | 35 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 45170 Absorption 0.1% (=1 g/l) 0.879, assuming all pairs of CYS residues form cystines Ext. coefficient 44920 Absorption 0.1% (=1 g/l) 0.874, assuming all CYS residues are reduced |
| Aromaticity: | 0.086 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 46.87 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.60, 28.39, 22.58] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.6452 |
| Grand average of hydropathicity (GRAVY): | -0.41 |