Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5421 |
| Number of amino acids: | 342 |
| Molecular Weight: | 37676.49 Da |
| Theoretical pI: | 6.08 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 25 | 7.31% |
| Cysteine CYS (C) | 3 | 0.88% |
| Glutamic Acid GLU (E) | 13 | 3.8% |
| Aspartic Acid ASP (D) | 22 | 6.43% |
| Glycine GLY (G) | 23 | 6.73% |
| Phynylalanine PHE (F) | 21 | 6.14% |
| Isoleucine ILE (I) | 16 | 4.68% |
| Histidine HIS (H) | 8 | 2.34% |
| Lysine LYS (K) | 18 | 5.26% |
| Methionine MET (M) | 1 | 0.29% |
| Leucine LEU (L) | 37 | 10.82% |
| Asparagine ASN (N) | 20 | 5.85% |
| Glutamine GLN (Q) | 9 | 2.63% |
| Proline PRO (P) | 18 | 5.26% |
| Serine SER (S) | 31 | 9.06% |
| Arginine ARG (R) | 13 | 3.8% |
| Threonine THR (T) | 26 | 7.6% |
| Tryptophan TRP (W) | 4 | 1.17% |
| Valine VAL (V) | 22 | 6.43% |
| Tyrosine TYR (Y) | 12 | 3.51% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1703 |
| Hydrogen | H | 2622 |
| Nitrogen | N | 448 |
| Oxygen | O | 511 |
| Sulphur | S | 4 |
| Formula | C1703H2622N448O511S4 |
| Total Number of Atoms: | 5288 |
| Total number of positively charged residues (ARG + LYS): | 31 |
| Total number of negatively charged residues (ASP + GLU): | 35 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 40005 Absorption 0.1% (=1 g/l) 1.062, assuming all pairs of CYS residues form cystines Ext. coefficient 39880 Absorption 0.1% (=1 g/l) 1.058, assuming all CYS residues are reduced |
| Aromaticity: | 0.108 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 34.06 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.75, 26.90, 22.22] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 86.4034 |
| Grand average of hydropathicity (GRAVY): | -0.18 |