Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5407 |
| Number of amino acids: | 249 |
| Molecular Weight: | 26366.77 Da |
| Theoretical pI: | 5.03 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 18 | 7.23% |
| Cysteine CYS (C) | 2 | 0.8% |
| Glutamic Acid GLU (E) | 4 | 1.61% |
| Aspartic Acid ASP (D) | 15 | 6.02% |
| Glycine GLY (G) | 15 | 6.02% |
| Phynylalanine PHE (F) | 12 | 4.82% |
| Isoleucine ILE (I) | 11 | 4.42% |
| Histidine HIS (H) | 3 | 1.2% |
| Lysine LYS (K) | 10 | 4.02% |
| Methionine MET (M) | 3 | 1.2% |
| Leucine LEU (L) | 25 | 10.04% |
| Asparagine ASN (N) | 14 | 5.62% |
| Glutamine GLN (Q) | 13 | 5.22% |
| Proline PRO (P) | 19 | 7.63% |
| Serine SER (S) | 31 | 12.45% |
| Arginine ARG (R) | 4 | 1.61% |
| Threonine THR (T) | 21 | 8.43% |
| Tryptophan TRP (W) | 1 | 0.4% |
| Valine VAL (V) | 23 | 9.24% |
| Tyrosine TYR (Y) | 5 | 2.01% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1175 |
| Hydrogen | H | 1855 |
| Nitrogen | N | 305 |
| Oxygen | O | 372 |
| Sulphur | S | 5 |
| Formula | C1175H1855N305O372S5 |
| Total Number of Atoms: | 3712 |
| Total number of positively charged residues (ARG + LYS): | 14 |
| Total number of negatively charged residues (ASP + GLU): | 19 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 13075 Absorption 0.1% (=1 g/l) 0.496, assuming all pairs of CYS residues form cystines Ext. coefficient 12950 Absorption 0.1% (=1 g/l) 0.491, assuming all CYS residues are reduced |
| Aromaticity: | 0.072 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.12 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.92, 31.73, 20.08] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 90.4018 |
| Grand average of hydropathicity (GRAVY): | 0.03 |