Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5406 |
| Number of amino acids: | 648 |
| Molecular Weight: | 69628.78 Da |
| Theoretical pI: | 7.79 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 29 | 4.48% |
| Cysteine CYS (C) | 7 | 1.08% |
| Glutamic Acid GLU (E) | 17 | 2.62% |
| Aspartic Acid ASP (D) | 4 | 0.62% |
| Glycine GLY (G) | 113 | 17.44% |
| Phynylalanine PHE (F) | 3 | 0.46% |
| Isoleucine ILE (I) | 5 | 0.77% |
| Histidine HIS (H) | 13 | 2.01% |
| Lysine LYS (K) | 8 | 1.23% |
| Methionine MET (M) | 4 | 0.62% |
| Leucine LEU (L) | 28 | 4.32% |
| Asparagine ASN (N) | 0 | 0% |
| Glutamine GLN (Q) | 206 | 31.79% |
| Proline PRO (P) | 69 | 10.65% |
| Serine SER (S) | 42 | 6.48% |
| Arginine ARG (R) | 14 | 2.16% |
| Threonine THR (T) | 26 | 4.01% |
| Tryptophan TRP (W) | 6 | 0.93% |
| Valine VAL (V) | 20 | 3.09% |
| Tyrosine TYR (Y) | 34 | 5.25% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2967 |
| Hydrogen | H | 4510 |
| Nitrogen | N | 936 |
| Oxygen | O | 999 |
| Sulphur | S | 11 |
| Formula | C2967H4510N936O999S11 |
| Total Number of Atoms: | 9423 |
| Total number of positively charged residues (ARG + LYS): | 22 |
| Total number of negatively charged residues (ASP + GLU): | 21 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 84035 Absorption 0.1% (=1 g/l) 1.207, assuming all pairs of CYS residues form cystines Ext. coefficient 83660 Absorption 0.1% (=1 g/l) 1.202, assuming all CYS residues are reduced |
| Aromaticity: | 0.066 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 82.90 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [14.81, 34.57, 12.04] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 33.287 |
| Grand average of hydropathicity (GRAVY): | -1.37 |