Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5403 |
| Number of amino acids: | 454 |
| Molecular Weight: | 50954.36 Da |
| Theoretical pI: | 6.39 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 18 | 3.96% |
| Cysteine CYS (C) | 19 | 4.19% |
| Glutamic Acid GLU (E) | 19 | 4.19% |
| Aspartic Acid ASP (D) | 22 | 4.85% |
| Glycine GLY (G) | 25 | 5.51% |
| Phynylalanine PHE (F) | 21 | 4.63% |
| Isoleucine ILE (I) | 18 | 3.96% |
| Histidine HIS (H) | 17 | 3.74% |
| Lysine LYS (K) | 22 | 4.85% |
| Methionine MET (M) | 15 | 3.3% |
| Leucine LEU (L) | 40 | 8.81% |
| Asparagine ASN (N) | 26 | 5.73% |
| Glutamine GLN (Q) | 17 | 3.74% |
| Proline PRO (P) | 29 | 6.39% |
| Serine SER (S) | 46 | 10.13% |
| Arginine ARG (R) | 14 | 3.08% |
| Threonine THR (T) | 22 | 4.85% |
| Tryptophan TRP (W) | 11 | 2.42% |
| Valine VAL (V) | 40 | 8.81% |
| Tyrosine TYR (Y) | 13 | 2.86% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2272 |
| Hydrogen | H | 3484 |
| Nitrogen | N | 606 |
| Oxygen | O | 661 |
| Sulphur | S | 34 |
| Formula | C2272H3484N606O661S34 |
| Total Number of Atoms: | 7057 |
| Total number of positively charged residues (ARG + LYS): | 36 |
| Total number of negatively charged residues (ASP + GLU): | 41 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 80995 Absorption 0.1% (=1 g/l) 1.590, assuming all pairs of CYS residues form cystines Ext. coefficient 79870 Absorption 0.1% (=1 g/l) 1.567, assuming all CYS residues are reduced |
| Aromaticity: | 0.099 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.03 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.50, 27.75, 20.26] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 79.3392 |
| Grand average of hydropathicity (GRAVY): | -0.14 |