Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5400 |
| Number of amino acids: | 372 |
| Molecular Weight: | 40541.54 Da |
| Theoretical pI: | 7.23 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 30 | 8.06% |
| Cysteine CYS (C) | 22 | 5.91% |
| Glutamic Acid GLU (E) | 12 | 3.23% |
| Aspartic Acid ASP (D) | 20 | 5.38% |
| Glycine GLY (G) | 37 | 9.95% |
| Phynylalanine PHE (F) | 17 | 4.57% |
| Isoleucine ILE (I) | 18 | 4.84% |
| Histidine HIS (H) | 12 | 3.23% |
| Lysine LYS (K) | 12 | 3.23% |
| Methionine MET (M) | 9 | 2.42% |
| Leucine LEU (L) | 16 | 4.3% |
| Asparagine ASN (N) | 19 | 5.11% |
| Glutamine GLN (Q) | 13 | 3.49% |
| Proline PRO (P) | 17 | 4.57% |
| Serine SER (S) | 40 | 10.75% |
| Arginine ARG (R) | 20 | 5.38% |
| Threonine THR (T) | 15 | 4.03% |
| Tryptophan TRP (W) | 10 | 2.69% |
| Valine VAL (V) | 22 | 5.91% |
| Tyrosine TYR (Y) | 11 | 2.96% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1761 |
| Hydrogen | H | 2672 |
| Nitrogen | N | 510 |
| Oxygen | O | 535 |
| Sulphur | S | 31 |
| Formula | C1761H2672N510O535S31 |
| Total Number of Atoms: | 5509 |
| Total number of positively charged residues (ARG + LYS): | 32 |
| Total number of negatively charged residues (ASP + GLU): | 32 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 72765 Absorption 0.1% (=1 g/l) 1.795, assuming all pairs of CYS residues form cystines Ext. coefficient 71390 Absorption 0.1% (=1 g/l) 1.761, assuming all CYS residues are reduced |
| Aromaticity: | 0.102 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 41.62 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [25.27, 30.38, 18.01] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 60.8602 |
| Grand average of hydropathicity (GRAVY): | -0.27 |