Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5398 |
| Number of amino acids: | 464 |
| Molecular Weight: | 53027.41 Da |
| Theoretical pI: | 6.26 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 29 | 6.25% |
| Cysteine CYS (C) | 3 | 0.65% |
| Glutamic Acid GLU (E) | 26 | 5.6% |
| Aspartic Acid ASP (D) | 21 | 4.53% |
| Glycine GLY (G) | 31 | 6.68% |
| Phynylalanine PHE (F) | 20 | 4.31% |
| Isoleucine ILE (I) | 20 | 4.31% |
| Histidine HIS (H) | 22 | 4.74% |
| Lysine LYS (K) | 21 | 4.53% |
| Methionine MET (M) | 8 | 1.72% |
| Leucine LEU (L) | 25 | 5.39% |
| Asparagine ASN (N) | 24 | 5.17% |
| Glutamine GLN (Q) | 12 | 2.59% |
| Proline PRO (P) | 28 | 6.03% |
| Serine SER (S) | 37 | 7.97% |
| Arginine ARG (R) | 18 | 3.88% |
| Threonine THR (T) | 29 | 6.25% |
| Tryptophan TRP (W) | 15 | 3.23% |
| Valine VAL (V) | 42 | 9.05% |
| Tyrosine TYR (Y) | 33 | 7.11% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2423 |
| Hydrogen | H | 3560 |
| Nitrogen | N | 634 |
| Oxygen | O | 694 |
| Sulphur | S | 11 |
| Formula | C2423H3560N634O694S11 |
| Total Number of Atoms: | 7322 |
| Total number of positively charged residues (ARG + LYS): | 39 |
| Total number of negatively charged residues (ASP + GLU): | 47 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 131795 Absorption 0.1% (=1 g/l) 2.485, assuming all pairs of CYS residues form cystines Ext. coefficient 131670 Absorption 0.1% (=1 g/l) 2.483, assuming all CYS residues are reduced |
| Aromaticity: | 0.147 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 42.26 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [33.41, 25.86, 18.97] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 70.3232 |
| Grand average of hydropathicity (GRAVY): | -0.42 |