Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5397 |
| Number of amino acids: | 500 |
| Molecular Weight: | 56343.87 Da |
| Theoretical pI: | 5.72 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 37 | 7.4% |
| Cysteine CYS (C) | 2 | 0.4% |
| Glutamic Acid GLU (E) | 29 | 5.8% |
| Aspartic Acid ASP (D) | 34 | 6.8% |
| Glycine GLY (G) | 39 | 7.8% |
| Phynylalanine PHE (F) | 21 | 4.2% |
| Isoleucine ILE (I) | 21 | 4.2% |
| Histidine HIS (H) | 9 | 1.8% |
| Lysine LYS (K) | 30 | 6% |
| Methionine MET (M) | 13 | 2.6% |
| Leucine LEU (L) | 40 | 8% |
| Asparagine ASN (N) | 18 | 3.6% |
| Glutamine GLN (Q) | 21 | 4.2% |
| Proline PRO (P) | 22 | 4.4% |
| Serine SER (S) | 33 | 6.6% |
| Arginine ARG (R) | 25 | 5% |
| Threonine THR (T) | 22 | 4.4% |
| Tryptophan TRP (W) | 8 | 1.6% |
| Valine VAL (V) | 46 | 9.2% |
| Tyrosine TYR (Y) | 30 | 6% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2542 |
| Hydrogen | H | 3900 |
| Nitrogen | N | 670 |
| Oxygen | O | 751 |
| Sulphur | S | 15 |
| Formula | C2542H3900N670O751S15 |
| Total Number of Atoms: | 7878 |
| Total number of positively charged residues (ARG + LYS): | 55 |
| Total number of negatively charged residues (ASP + GLU): | 63 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 88825 Absorption 0.1% (=1 g/l) 1.576, assuming all pairs of CYS residues form cystines Ext. coefficient 88700 Absorption 0.1% (=1 g/l) 1.574, assuming all CYS residues are reduced |
| Aromaticity: | 0.118 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 39.09 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [33.20, 22.40, 23.80] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.66 |
| Grand average of hydropathicity (GRAVY): | -0.32 |