Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5387 |
| Number of amino acids: | 375 |
| Molecular Weight: | 40258.09 Da |
| Theoretical pI: | 6.26 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 28 | 7.47% |
| Cysteine CYS (C) | 11 | 2.93% |
| Glutamic Acid GLU (E) | 9 | 2.4% |
| Aspartic Acid ASP (D) | 23 | 6.13% |
| Glycine GLY (G) | 35 | 9.33% |
| Phynylalanine PHE (F) | 14 | 3.73% |
| Isoleucine ILE (I) | 21 | 5.6% |
| Histidine HIS (H) | 11 | 2.93% |
| Lysine LYS (K) | 14 | 3.73% |
| Methionine MET (M) | 9 | 2.4% |
| Leucine LEU (L) | 24 | 6.4% |
| Asparagine ASN (N) | 35 | 9.33% |
| Glutamine GLN (Q) | 6 | 1.6% |
| Proline PRO (P) | 15 | 4% |
| Serine SER (S) | 39 | 10.4% |
| Arginine ARG (R) | 14 | 3.73% |
| Threonine THR (T) | 22 | 5.87% |
| Tryptophan TRP (W) | 7 | 1.87% |
| Valine VAL (V) | 29 | 7.73% |
| Tyrosine TYR (Y) | 9 | 2.4% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1752 |
| Hydrogen | H | 2719 |
| Nitrogen | N | 501 |
| Oxygen | O | 551 |
| Sulphur | S | 20 |
| Formula | C1752H2719N501O551S20 |
| Total Number of Atoms: | 5543 |
| Total number of positively charged residues (ARG + LYS): | 28 |
| Total number of negatively charged residues (ASP + GLU): | 32 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 52535 Absorption 0.1% (=1 g/l) 1.305, assuming all pairs of CYS residues form cystines Ext. coefficient 51910 Absorption 0.1% (=1 g/l) 1.289, assuming all CYS residues are reduced |
| Aromaticity: | 0.080 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 33.14 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.73, 33.07, 18.67] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 76.6933 |
| Grand average of hydropathicity (GRAVY): | -0.18 |