Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5379 |
| Number of amino acids: | 833 |
| Molecular Weight: | 88899.1 Da |
| Theoretical pI: | 8.73 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 87 | 10.44% |
| Cysteine CYS (C) | 13 | 1.56% |
| Glutamic Acid GLU (E) | 51 | 6.12% |
| Aspartic Acid ASP (D) | 44 | 5.28% |
| Glycine GLY (G) | 72 | 8.64% |
| Phynylalanine PHE (F) | 24 | 2.88% |
| Isoleucine ILE (I) | 17 | 2.04% |
| Histidine HIS (H) | 28 | 3.36% |
| Lysine LYS (K) | 41 | 4.92% |
| Methionine MET (M) | 16 | 1.92% |
| Leucine LEU (L) | 79 | 9.48% |
| Asparagine ASN (N) | 23 | 2.76% |
| Glutamine GLN (Q) | 16 | 1.92% |
| Proline PRO (P) | 77 | 9.24% |
| Serine SER (S) | 72 | 8.64% |
| Arginine ARG (R) | 62 | 7.44% |
| Threonine THR (T) | 32 | 3.84% |
| Tryptophan TRP (W) | 3 | 0.36% |
| Valine VAL (V) | 67 | 8.04% |
| Tyrosine TYR (Y) | 9 | 1.08% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3883 |
| Hydrogen | H | 6246 |
| Nitrogen | N | 1158 |
| Oxygen | O | 1176 |
| Sulphur | S | 29 |
| Formula | C3883H6246N1158O1176S29 |
| Total Number of Atoms: | 12492 |
| Total number of positively charged residues (ARG + LYS): | 103 |
| Total number of negatively charged residues (ASP + GLU): | 95 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 30660 Absorption 0.1% (=1 g/l) 0.345, assuming all pairs of CYS residues form cystines Ext. coefficient 29910 Absorption 0.1% (=1 g/l) 0.336, assuming all CYS residues are reduced |
| Aromaticity: | 0.043 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 56.74 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [23.89, 29.29, 27.97] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.7155 |
| Grand average of hydropathicity (GRAVY): | -0.36 |