Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5357 |
| Number of amino acids: | 314 |
| Molecular Weight: | 34585.29 Da |
| Theoretical pI: | 7.1 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 32 | 10.19% |
| Cysteine CYS (C) | 8 | 2.55% |
| Glutamic Acid GLU (E) | 9 | 2.87% |
| Aspartic Acid ASP (D) | 23 | 7.32% |
| Glycine GLY (G) | 19 | 6.05% |
| Phynylalanine PHE (F) | 21 | 6.69% |
| Isoleucine ILE (I) | 14 | 4.46% |
| Histidine HIS (H) | 4 | 1.27% |
| Lysine LYS (K) | 14 | 4.46% |
| Methionine MET (M) | 11 | 3.5% |
| Leucine LEU (L) | 26 | 8.28% |
| Asparagine ASN (N) | 21 | 6.69% |
| Glutamine GLN (Q) | 14 | 4.46% |
| Proline PRO (P) | 13 | 4.14% |
| Serine SER (S) | 25 | 7.96% |
| Arginine ARG (R) | 18 | 5.73% |
| Threonine THR (T) | 16 | 5.1% |
| Tryptophan TRP (W) | 1 | 0.32% |
| Valine VAL (V) | 18 | 5.73% |
| Tyrosine TYR (Y) | 7 | 2.23% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1517 |
| Hydrogen | H | 2378 |
| Nitrogen | N | 426 |
| Oxygen | O | 462 |
| Sulphur | S | 19 |
| Formula | C1517H2378N426O462S19 |
| Total Number of Atoms: | 4802 |
| Total number of positively charged residues (ARG + LYS): | 32 |
| Total number of negatively charged residues (ASP + GLU): | 32 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 16430 Absorption 0.1% (=1 g/l) 0.475, assuming all pairs of CYS residues form cystines Ext. coefficient 15930 Absorption 0.1% (=1 g/l) 0.461, assuming all CYS residues are reduced |
| Aromaticity: | 0.092 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 47.13 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.71, 24.84, 24.84] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 76.4968 |
| Grand average of hydropathicity (GRAVY): | -0.18 |