Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5356 |
| Number of amino acids: | 109 |
| Molecular Weight: | 12301.37 Da |
| Theoretical pI: | 8.98 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 6 | 5.5% |
| Cysteine CYS (C) | 6 | 5.5% |
| Glutamic Acid GLU (E) | 5 | 4.59% |
| Aspartic Acid ASP (D) | 6 | 5.5% |
| Glycine GLY (G) | 7 | 6.42% |
| Phynylalanine PHE (F) | 8 | 7.34% |
| Isoleucine ILE (I) | 8 | 7.34% |
| Histidine HIS (H) | 4 | 3.67% |
| Lysine LYS (K) | 11 | 10.09% |
| Methionine MET (M) | 3 | 2.75% |
| Leucine LEU (L) | 8 | 7.34% |
| Asparagine ASN (N) | 4 | 3.67% |
| Glutamine GLN (Q) | 4 | 3.67% |
| Proline PRO (P) | 3 | 2.75% |
| Serine SER (S) | 8 | 7.34% |
| Arginine ARG (R) | 5 | 4.59% |
| Threonine THR (T) | 4 | 3.67% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 7 | 6.42% |
| Tyrosine TYR (Y) | 2 | 1.83% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 546 |
| Hydrogen | H | 869 |
| Nitrogen | N | 151 |
| Oxygen | O | 154 |
| Sulphur | S | 9 |
| Formula | C546H869N151O154S9 |
| Total Number of Atoms: | 1729 |
| Total number of positively charged residues (ARG + LYS): | 16 |
| Total number of negatively charged residues (ASP + GLU): | 11 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 3355 Absorption 0.1% (=1 g/l) 0.273, assuming all pairs of CYS residues form cystines Ext. coefficient 2980 Absorption 0.1% (=1 g/l) 0.242, assuming all CYS residues are reduced |
| Aromaticity: | 0.092 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 42.52 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.28, 20.18, 20.18] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.3762 |
| Grand average of hydropathicity (GRAVY): | -0.13 |