Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5353 |
| Number of amino acids: | 508 |
| Molecular Weight: | 54226.21 Da |
| Theoretical pI: | 5.23 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 45 | 8.86% |
| Cysteine CYS (C) | 12 | 2.36% |
| Glutamic Acid GLU (E) | 29 | 5.71% |
| Aspartic Acid ASP (D) | 25 | 4.92% |
| Glycine GLY (G) | 60 | 11.81% |
| Phynylalanine PHE (F) | 21 | 4.13% |
| Isoleucine ILE (I) | 32 | 6.3% |
| Histidine HIS (H) | 5 | 0.98% |
| Lysine LYS (K) | 30 | 5.91% |
| Methionine MET (M) | 12 | 2.36% |
| Leucine LEU (L) | 43 | 8.46% |
| Asparagine ASN (N) | 13 | 2.56% |
| Glutamine GLN (Q) | 21 | 4.13% |
| Proline PRO (P) | 26 | 5.12% |
| Serine SER (S) | 33 | 6.5% |
| Arginine ARG (R) | 14 | 2.76% |
| Threonine THR (T) | 25 | 4.92% |
| Tryptophan TRP (W) | 6 | 1.18% |
| Valine VAL (V) | 39 | 7.68% |
| Tyrosine TYR (Y) | 17 | 3.35% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2429 |
| Hydrogen | H | 3812 |
| Nitrogen | N | 630 |
| Oxygen | O | 726 |
| Sulphur | S | 24 |
| Formula | C2429H3812N630O726S24 |
| Total Number of Atoms: | 7621 |
| Total number of positively charged residues (ARG + LYS): | 44 |
| Total number of negatively charged residues (ASP + GLU): | 54 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 59080 Absorption 0.1% (=1 g/l) 1.090, assuming all pairs of CYS residues form cystines Ext. coefficient 58330 Absorption 0.1% (=1 g/l) 1.076, assuming all CYS residues are reduced |
| Aromaticity: | 0.087 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.92 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.10, 25.98, 25.39] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 88.7008 |
| Grand average of hydropathicity (GRAVY): | 0.04 |