Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5349 |
| Number of amino acids: | 314 |
| Molecular Weight: | 35090.51 Da |
| Theoretical pI: | 6.07 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 19 | 6.05% |
| Cysteine CYS (C) | 2 | 0.64% |
| Glutamic Acid GLU (E) | 10 | 3.18% |
| Aspartic Acid ASP (D) | 19 | 6.05% |
| Glycine GLY (G) | 18 | 5.73% |
| Phynylalanine PHE (F) | 25 | 7.96% |
| Isoleucine ILE (I) | 13 | 4.14% |
| Histidine HIS (H) | 8 | 2.55% |
| Lysine LYS (K) | 16 | 5.1% |
| Methionine MET (M) | 5 | 1.59% |
| Leucine LEU (L) | 28 | 8.92% |
| Asparagine ASN (N) | 17 | 5.41% |
| Glutamine GLN (Q) | 14 | 4.46% |
| Proline PRO (P) | 13 | 4.14% |
| Serine SER (S) | 43 | 13.69% |
| Arginine ARG (R) | 9 | 2.87% |
| Threonine THR (T) | 11 | 3.5% |
| Tryptophan TRP (W) | 5 | 1.59% |
| Valine VAL (V) | 26 | 8.28% |
| Tyrosine TYR (Y) | 13 | 4.14% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1597 |
| Hydrogen | H | 2401 |
| Nitrogen | N | 409 |
| Oxygen | O | 471 |
| Sulphur | S | 7 |
| Formula | C1597H2401N409O471S7 |
| Total Number of Atoms: | 4885 |
| Total number of positively charged residues (ARG + LYS): | 25 |
| Total number of negatively charged residues (ASP + GLU): | 29 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 46995 Absorption 0.1% (=1 g/l) 1.339, assuming all pairs of CYS residues form cystines Ext. coefficient 46870 Absorption 0.1% (=1 g/l) 1.336, assuming all CYS residues are reduced |
| Aromaticity: | 0.137 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.12 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [35.03, 28.98, 19.75] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 80.9873 |
| Grand average of hydropathicity (GRAVY): | -0.12 |