Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5340 |
| Number of amino acids: | 319 |
| Molecular Weight: | 35208.74 Da |
| Theoretical pI: | 8.84 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 18 | 5.64% |
| Cysteine CYS (C) | 2 | 0.63% |
| Glutamic Acid GLU (E) | 19 | 5.96% |
| Aspartic Acid ASP (D) | 13 | 4.08% |
| Glycine GLY (G) | 27 | 8.46% |
| Phynylalanine PHE (F) | 13 | 4.08% |
| Isoleucine ILE (I) | 33 | 10.34% |
| Histidine HIS (H) | 2 | 0.63% |
| Lysine LYS (K) | 23 | 7.21% |
| Methionine MET (M) | 3 | 0.94% |
| Leucine LEU (L) | 26 | 8.15% |
| Asparagine ASN (N) | 17 | 5.33% |
| Glutamine GLN (Q) | 17 | 5.33% |
| Proline PRO (P) | 24 | 7.52% |
| Serine SER (S) | 16 | 5.02% |
| Arginine ARG (R) | 13 | 4.08% |
| Threonine THR (T) | 14 | 4.39% |
| Tryptophan TRP (W) | 1 | 0.31% |
| Valine VAL (V) | 26 | 8.15% |
| Tyrosine TYR (Y) | 12 | 3.76% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1601 |
| Hydrogen | H | 2556 |
| Nitrogen | N | 420 |
| Oxygen | O | 460 |
| Sulphur | S | 5 |
| Formula | C1601H2556N420O460S5 |
| Total Number of Atoms: | 5042 |
| Total number of positively charged residues (ARG + LYS): | 36 |
| Total number of negatively charged residues (ASP + GLU): | 32 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 23505 Absorption 0.1% (=1 g/l) 0.668, assuming all pairs of CYS residues form cystines Ext. coefficient 23380 Absorption 0.1% (=1 g/l) 0.664, assuming all CYS residues are reduced |
| Aromaticity: | 0.082 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 30.87 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [34.80, 26.33, 20.69] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 101.411 |
| Grand average of hydropathicity (GRAVY): | -0.12 |