Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5333 |
| Number of amino acids: | 214 |
| Molecular Weight: | 24229.53 Da |
| Theoretical pI: | 7.76 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 16 | 7.48% |
| Cysteine CYS (C) | 8 | 3.74% |
| Glutamic Acid GLU (E) | 17 | 7.94% |
| Aspartic Acid ASP (D) | 7 | 3.27% |
| Glycine GLY (G) | 14 | 6.54% |
| Phynylalanine PHE (F) | 10 | 4.67% |
| Isoleucine ILE (I) | 11 | 5.14% |
| Histidine HIS (H) | 3 | 1.4% |
| Lysine LYS (K) | 11 | 5.14% |
| Methionine MET (M) | 5 | 2.34% |
| Leucine LEU (L) | 18 | 8.41% |
| Asparagine ASN (N) | 7 | 3.27% |
| Glutamine GLN (Q) | 14 | 6.54% |
| Proline PRO (P) | 9 | 4.21% |
| Serine SER (S) | 21 | 9.81% |
| Arginine ARG (R) | 14 | 6.54% |
| Threonine THR (T) | 10 | 4.67% |
| Tryptophan TRP (W) | 6 | 2.8% |
| Valine VAL (V) | 8 | 3.74% |
| Tyrosine TYR (Y) | 5 | 2.34% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1067 |
| Hydrogen | H | 1662 |
| Nitrogen | N | 300 |
| Oxygen | O | 320 |
| Sulphur | S | 13 |
| Formula | C1067H1662N300O320S13 |
| Total Number of Atoms: | 3362 |
| Total number of positively charged residues (ARG + LYS): | 25 |
| Total number of negatively charged residues (ASP + GLU): | 24 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 40950 Absorption 0.1% (=1 g/l) 1.690, assuming all pairs of CYS residues form cystines Ext. coefficient 40450 Absorption 0.1% (=1 g/l) 1.669, assuming all CYS residues are reduced |
| Aromaticity: | 0.098 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 47.39 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.10, 23.83, 26.17] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 71.1682 |
| Grand average of hydropathicity (GRAVY): | -0.42 |