Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5320 |
| Number of amino acids: | 424 |
| Molecular Weight: | 49843.93 Da |
| Theoretical pI: | 5.81 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 23 | 5.42% |
| Cysteine CYS (C) | 5 | 1.18% |
| Glutamic Acid GLU (E) | 38 | 8.96% |
| Aspartic Acid ASP (D) | 39 | 9.2% |
| Glycine GLY (G) | 25 | 5.9% |
| Phynylalanine PHE (F) | 20 | 4.72% |
| Isoleucine ILE (I) | 26 | 6.13% |
| Histidine HIS (H) | 8 | 1.89% |
| Lysine LYS (K) | 43 | 10.14% |
| Methionine MET (M) | 4 | 0.94% |
| Leucine LEU (L) | 24 | 5.66% |
| Asparagine ASN (N) | 20 | 4.72% |
| Glutamine GLN (Q) | 12 | 2.83% |
| Proline PRO (P) | 28 | 6.6% |
| Serine SER (S) | 20 | 4.72% |
| Arginine ARG (R) | 27 | 6.37% |
| Threonine THR (T) | 11 | 2.59% |
| Tryptophan TRP (W) | 12 | 2.83% |
| Valine VAL (V) | 17 | 4.01% |
| Tyrosine TYR (Y) | 22 | 5.19% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2247 |
| Hydrogen | H | 3400 |
| Nitrogen | N | 608 |
| Oxygen | O | 664 |
| Sulphur | S | 9 |
| Formula | C2247H3400N608O664S9 |
| Total Number of Atoms: | 6928 |
| Total number of positively charged residues (ARG + LYS): | 70 |
| Total number of negatively charged residues (ASP + GLU): | 77 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 99030 Absorption 0.1% (=1 g/l) 1.987, assuming all pairs of CYS residues form cystines Ext. coefficient 98780 Absorption 0.1% (=1 g/l) 1.982, assuming all CYS residues are reduced |
| Aromaticity: | 0.127 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 43.51 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.54, 21.93, 20.99] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 63.0425 |
| Grand average of hydropathicity (GRAVY): | -0.98 |